Variant report

Variant	rs1348827
Chromosome Location	chr2:77267654-77267655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10172719	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs10190179	0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs10190198	0.84[JPT][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10190443	0.80[EUR][1000 genomes]
rs10199256	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs10201530	0.84[CEU][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13430336	0.84[EUR][1000 genomes]
rs1345136	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1348824	0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1348826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1348831	0.83[YRI][hapmap]
rs1374388	0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1446692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446693	0.83[CEU][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs1446695	0.83[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1446697	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1446698	0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs1446701	0.83[YRI][hapmap]
rs1446703	0.84[JPT][hapmap]
rs1446704	0.80[TSI][hapmap]
rs1446705	0.84[JPT][hapmap];0.83[YRI][hapmap]
rs1446707	0.83[YRI][hapmap]
rs1446710	0.91[MEX][hapmap];0.85[TSI][hapmap]
rs1446724	0.85[TSI][hapmap]
rs1446725	0.85[TSI][hapmap]
rs1470504	0.85[TSI][hapmap]
rs1584234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17013592	0.80[TSI][hapmap]
rs17013595	0.80[TSI][hapmap]
rs1867892	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028913	0.84[CEU][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs2121409	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4143796	0.86[MEX][hapmap];0.85[TSI][hapmap]
rs4853291	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6547114	0.83[YRI][hapmap]
rs6547115	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs6547117	0.80[TSI][hapmap]
rs6547118	0.80[TSI][hapmap]
rs6708058	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6718440	0.81[EUR][1000 genomes]
rs6724799	0.84[JPT][hapmap];0.91[YRI][hapmap]
rs6732462	0.81[MEX][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs727000	0.82[ASW][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs7562487	0.85[TSI][hapmap]
rs7563917	0.88[LWK][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs7573982	0.80[YRI][hapmap]
rs7597923	0.82[ASW][hapmap];0.86[GIH][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs765572	0.84[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77267400-77267800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr2:77267600-77267800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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