Variant report
| Variant | rs1446692 |
|---|---|
| Chromosome Location | chr2:77267379-77267380 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10190179 | 0.81[EUR][1000 genomes] |
| rs10190198 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10190443 | 0.80[EUR][1000 genomes] |
| rs10201530 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13430336 | 0.84[EUR][1000 genomes] |
| rs1345136 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1348824 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1348827 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1374388 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1446693 | 0.86[EUR][1000 genomes] |
| rs1446695 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1446697 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1446698 | 0.80[EUR][1000 genomes] |
| rs1867892 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2028913 | 0.83[EUR][1000 genomes] |
| rs2121409 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4853291 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6547115 | 0.81[AMR][1000 genomes] |
| rs6708058 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6718440 | 0.81[EUR][1000 genomes] |
| rs6732462 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs765572 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv997284 | chr2:77233426-77303198 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1014895 | chr2:77263452-77414507 | Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv874331 | chr2:77264354-77305123 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:77266000-77267600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
