Variant report

Variant	rs1349022
Chromosome Location	chr3:79075911-79075912
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12495750	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs13096526	1.00[CHD][hapmap]
rs1374882	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1374883	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1550929	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1550930	1.00[ASW][hapmap];1.00[CHD][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs4680920	0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6548603	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6548607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6548608	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795076	1.00[ASW][hapmap];1.00[CHD][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1349022	COCH	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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