Variant report

Variant	rs1349689
Chromosome Location	chr11:119978334-119978335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10892532	0.83[ASN][1000 genomes]
rs1893391	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938781	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4938782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1050132	chr11:119976310-120010437	Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119973800-119978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119975200-119980400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:119976400-119978400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119976400-119979400	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:119976400-119979400	Enhancers	Brain Hippocampus Middle	brain
6	chr11:119976400-119979600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:119976600-119979600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119977000-119978800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119977400-119979000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:119977400-119979000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr11:119977600-119979000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:119977600-119979000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:119977800-119979000	Enhancers	Brain Angular Gyrus	brain
14	chr11:119978000-119978600	Weak transcription	Brain Anterior Caudate	brain
15	chr11:119978200-119979000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:119978200-119979400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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