Variant report

Variant	rs1893391
Chromosome Location	chr11:119979732-119979733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10892532	0.83[ASN][1000 genomes]
rs1349689	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938781	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4938782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1050132	chr11:119976310-120010437	Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119975200-119980400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119978400-119980000	Enhancers	Fetal Intestine Small	intestine
3	chr11:119978800-119982600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119979000-119980000	Enhancers	NHEK	skin
5	chr11:119979000-119980400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119979200-119979800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:119979200-119979800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr11:119979200-119980000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:119979200-119980000	Enhancers	HMEC	breast
10	chr11:119979200-119980400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:119979600-119981400	Weak transcription	Esophagus	oesophagus
12	chr11:119979600-119984600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:119979600-119988800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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