Variant report

Variant	rs1349826
Chromosome Location	chr2:184475462-184475463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12998867	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1377766	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123821	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2219101	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368424	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34376551	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56141752	0.84[AFR][1000 genomes]
rs56343602	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6710374	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6710744	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738561	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6758762	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7569633	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184470000-184475600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:184470000-184478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:184474600-184475600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:184474800-184475800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:184474800-184476000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:184475000-184476200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:184475200-184475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:184475200-184475800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:184475400-184475600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:184475400-184475800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:184475400-184475800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:184475400-184476000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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