Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:116355458-116355994	HepG2	liver:	n/a	n/a
2	FOS	chr5:116355397-116355790	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr5:116355447-116355713	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr5:116355442-116355813	MCF10A-Er-Src	breast:	n/a	n/a
5	E2F4	chr5:116355522-116355775	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr5:116355218-116355784	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr5:116355356-116355900	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr5:116355444-116355790	MCF10A-Er-Src	breast:	n/a	n/a
9	CTCF	chr5:116355460-116355724	GM12878	blood:	n/a	n/a
10	FOS	chr5:116355447-116355685	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr5:116355462-116355747	A549	lung:	n/a	n/a
12	CEBPB	chr5:116355475-116355742	Hela-S3	cervix:	n/a	n/a
13	FOS	chr5:116355421-116355806	MCF10A-Er-Src	breast:	n/a	n/a
14	EP300	chr5:116355594-116355668	Hela-S3	cervix:	n/a	n/a
15	STAT3	chr5:116355410-116355829	MCF10A-Er-Src	breast:	n/a	n/a
16	MYC	chr5:116355537-116355773	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000250650	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1350577	0.82[EUR][1000 genomes]
rs1350578	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1350579	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1459093	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35326993	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57780571	0.82[EUR][1000 genomes]
rs58275123	0.91[EUR][1000 genomes]
rs58275463	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594989	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6594992	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6862079	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6870673	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6870938	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6878581	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6893943	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73254902	0.91[EUR][1000 genomes]
rs73256904	0.91[EUR][1000 genomes]
rs73266963	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73266968	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73266983	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73268804	0.82[EUR][1000 genomes]
rs73782990	0.82[EUR][1000 genomes]
rs73782997	0.82[EUR][1000 genomes]
rs73782999	0.82[EUR][1000 genomes]
rs73786405	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1016586	chr5:116317968-116377074	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1028067	chr5:116340955-116427869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv4970	chr5:116345489-116390583	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882751	chr5:116349590-116453954	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116349600-116358200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:116352800-116356600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:116355000-116356200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:116355400-116355800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:116355400-116356200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:116355600-116356400	Enhancers	HUES6 Cell Line	embryonic stem cell

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