Variant report

Variant	rs6862079
Chromosome Location	chr5:116324256-116324257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1350575	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1350578	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1350579	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1459093	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35326993	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58275123	0.83[EUR][1000 genomes]
rs58275463	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6594989	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6594992	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6870673	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6870938	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6878581	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6893943	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73254902	0.83[EUR][1000 genomes]
rs73256904	0.83[EUR][1000 genomes]
rs73266963	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73266968	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73266983	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73268804	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020292	chr5:116183712-116349633	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1016586	chr5:116317968-116377074	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116321800-116324800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:116323400-116324600	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links