Variant report

Variant	rs1350686
Chromosome Location	chr6:81662008-81662009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10485279	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10806205	0.92[EUR][1000 genomes]
rs10943759	0.92[EUR][1000 genomes]
rs471582	0.92[EUR][1000 genomes]
rs471719	0.92[EUR][1000 genomes]
rs473143	0.90[EUR][1000 genomes]
rs476018	0.89[EUR][1000 genomes]
rs477875	0.91[EUR][1000 genomes]
rs479447	0.92[EUR][1000 genomes]
rs487154	0.92[EUR][1000 genomes]
rs488414	0.91[EUR][1000 genomes]
rs488674	0.91[EUR][1000 genomes]
rs491478	0.92[EUR][1000 genomes]
rs491598	0.92[EUR][1000 genomes]
rs494686	0.92[EUR][1000 genomes]
rs501424	0.91[EUR][1000 genomes]
rs502266	0.91[EUR][1000 genomes]
rs510194	0.92[EUR][1000 genomes]
rs514377	0.92[EUR][1000 genomes]
rs516268	0.92[EUR][1000 genomes]
rs517235	0.92[EUR][1000 genomes]
rs517722	0.91[EUR][1000 genomes]
rs518030	0.92[EUR][1000 genomes]
rs519011	0.92[EUR][1000 genomes]
rs520645	0.91[EUR][1000 genomes]
rs539394	0.92[EUR][1000 genomes]
rs539397	0.92[EUR][1000 genomes]
rs539413	0.91[EUR][1000 genomes]
rs542894	0.92[EUR][1000 genomes]
rs549189	0.90[EUR][1000 genomes]
rs549957	0.88[EUR][1000 genomes]
rs556458	0.91[EUR][1000 genomes]
rs563677	0.91[EUR][1000 genomes]
rs566162	0.92[EUR][1000 genomes]
rs569758	0.92[EUR][1000 genomes]
rs570513	0.94[EUR][1000 genomes]
rs572622	0.92[EUR][1000 genomes]
rs572744	0.92[EUR][1000 genomes]
rs578465	0.92[EUR][1000 genomes]
rs578541	0.92[EUR][1000 genomes]
rs580207	0.92[EUR][1000 genomes]
rs580317	0.91[EUR][1000 genomes]
rs62426179	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66604649	0.88[ASN][1000 genomes]
rs9294187	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352906	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032130	chr6:81572030-81722231	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762604	chr6:81593275-81742093	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428487	chr6:81607405-81742838	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033733	chr6:81641291-81728782	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1350686	ME1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81662000-81662800	Enhancers	Dnd41	blood
2	chr6:81662000-81663200	Enhancers	Fetal Intestine Large	intestine

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