Variant report

Variant	rs1352707
Chromosome Location	chr4:106457318-106457319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106456619..106459563-chr4:106461731..106463301,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10016616	0.85[YRI][hapmap]
rs10024863	0.84[YRI][hapmap]
rs10032241	0.83[YRI][hapmap]
rs10488942	0.83[YRI][hapmap]
rs1388040	1.00[ASN][1000 genomes]
rs1490596	0.85[YRI][hapmap]
rs1490599	1.00[ASN][1000 genomes]
rs1490600	1.00[ASN][1000 genomes]
rs1490601	1.00[ASN][1000 genomes]
rs1490602	1.00[ASN][1000 genomes]
rs17035753	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17584200	0.99[ASN][1000 genomes]
rs17839078	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158202	0.84[YRI][hapmap]
rs2189228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2866798	0.96[ASN][1000 genomes]
rs2866799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3796916	0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs3796917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822274	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3960769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3974414	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4699186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4699187	0.96[ASN][1000 genomes]
rs4699188	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6533205	0.97[ASN][1000 genomes]
rs6817760	1.00[ASN][1000 genomes]
rs6853877	1.00[ASN][1000 genomes]
rs6858204	0.83[YRI][hapmap]
rs730207	0.84[YRI][hapmap]
rs730208	0.85[YRI][hapmap]
rs730850	0.83[YRI][hapmap]
rs7661571	0.84[YRI][hapmap]
rs7666509	0.81[ASN][1000 genomes]
rs7672413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7686705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1352707	PPA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106448600-106466200	Weak transcription	Pancreas	Pancrea
2	chr4:106448800-106458000	Weak transcription	Gastric	stomach

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