Variant report

Variant	rs13540
Chromosome Location	chr8:1711275-1711276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:130)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:130 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr8:1711223-1711475	GM12878	blood:	n/a	n/a
2	ELK1	chr8:1711273-1711286	GM12878	blood:	n/a	n/a
3	ELF1	chr8:1711149-1711542	GM12878	blood:	n/a	chr8:1711350-1711362
4	POLR2A	chr8:1711156-1713034	GM19099	blood:	n/a	n/a
5	POLR2A	chr8:1711148-1711706	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr8:1710968-1713116	GM18951	blood:	n/a	n/a
7	BHLHE40	chr8:1711171-1711562	HepG2	liver:	n/a	n/a
8	TBL1XR1	chr8:1710684-1711432	K562	blood:	n/a	n/a
9	CHD2	chr8:1711083-1711411	GM12878	blood:	n/a	n/a
10	POLR2A	chr8:1711235-1711501	HUVEC	blood vessel:	n/a	n/a
11	MYC	chr8:1710664-1711453	K562	blood:	n/a	n/a
12	POLR2A	chr8:1711191-1711686	ProgFib	skin:	n/a	n/a
13	POLR2A	chr8:1711158-1712982	MCF-7	breast:	n/a	n/a
14	POLR2A	chr8:1704744-1714404	K562	blood:	n/a	n/a
15	POLR2A	chr8:1711180-1711570	A549	lung:	n/a	n/a
16	SMC3	chr8:1711165-1711430	Hela-S3	cervix:	n/a	n/a
17	ZMIZ1	chr8:1710590-1711442	K562	blood:	n/a	n/a
18	HEY1	chr8:1711229-1711464	HepG2	liver:	n/a	n/a
19	POLR2A	chr8:1706662-1711460	PBDE	blood:	n/a	n/a
20	BHLHE40	chr8:1711206-1712723	GM12878	blood:	n/a	chr8:1712616-1712632
21	POLR2A	chr8:1711188-1711571	A549	lung:	n/a	n/a
22	POLR2A	chr8:1711177-1711421	HepG2	liver:	n/a	n/a
23	BHLHE40	chr8:1711217-1711474	K562	blood:	n/a	n/a
24	CEBPD	chr8:1710617-1711471	K562	blood:	n/a	n/a
25	POLR2A	chr8:1711164-1712800	GM18526	blood:	n/a	n/a
26	SMC3	chr8:1711067-1711416	GM12878	blood:	n/a	n/a
27	TAF1	chr8:1711176-1711536	K562	blood:	n/a	n/a
28	YY1	chr8:1711232-1711561	K562	blood:	n/a	chr8:1711534-1711545 chr8:1711534-1711543 chr8:1711442-1711456 chr8:1711500-1711511
29	PAX5	chr8:1711225-1711564	GM12892	blood:	n/a	n/a
30	TAF1	chr8:1711214-1711576	HepG2	liver:	n/a	n/a
31	JUND	chr8:1710619-1711579	GM12878	blood:	n/a	chr8:1711473-1711482
32	JUND	chr8:1711158-1711582	A549	lung:	n/a	chr8:1711473-1711482
33	YY1	chr8:1711259-1711574	GM12891	blood:	n/a	chr8:1711534-1711545 chr8:1711534-1711543 chr8:1711442-1711456 chr8:1711500-1711511
34	HEY1	chr8:1711224-1711497	HepG2	liver:	n/a	n/a
35	POLR2A	chr8:1711102-1713007	GM12892	blood:	n/a	n/a
36	RCOR1	chr8:1710675-1711387	K562	blood:	n/a	n/a
37	RUNX3	chr8:1711118-1711369	GM12878	blood:	n/a	n/a
38	HEY1	chr8:1711225-1711450	K562	blood:	n/a	n/a
39	POLR2A	chr8:1710855-1711559	PFSK-1	brain:	n/a	n/a
40	POLR2A	chr8:1711192-1711454	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr8:1711167-1711526	GM12878	blood:	n/a	n/a
42	GATA1	chr8:1709786-1711444	PBDE	blood:	n/a	n/a
43	TAF1	chr8:1711160-1711586	HepG2	liver:	n/a	n/a
44	JUN	chr8:1710710-1711378	K562	blood:	n/a	n/a
45	UBTF	chr8:1710564-1711505	K562	blood:	n/a	n/a
46	POLR2A	chr8:1710578-1711501	MCF10A-Er-Src	breast:	n/a	n/a
47	POLR2A	chr8:1711272-1711277	Gliobla	brain:	n/a	n/a
48	MAZ	chr8:1711067-1711524	GM12878	blood:	n/a	n/a
49	HMGN3	chr8:1711155-1711518	K562	blood:	n/a	n/a
50	TBL1XR1	chr8:1711253-1711453	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:1711235-1711285	Caco-2	colon:	n/a
2	chr8:1711235-1711285	ovcar-3	ovarian:	n/a
3	chr8:1711235-1711285	IMR90	lung:	fetal
4	chr8:1711235-1711285	RPTEC	kidney:	n/a
5	chr8:1711235-1711285	A549	lung:	n/a
6	chr8:1711235-1711285	H1-hESC	embryonic stem cell:	embryo
7	chr8:1711235-1711285	GM19239	blood:	n/a
8	chr8:1711235-1711285	HEEpiC	esophagus:	n/a
9	chr8:1711235-1711285	HRE	kidney:	n/a
10	chr8:1711235-1711285	HMEC	breast:	n/a
11	chr8:1711235-1711285	PFSK-1	brain:	n/a
12	chr8:1711235-1711285	BJ	skin:	n/a
13	chr8:1711235-1711285	AG04450	lung:	fetal
14	chr8:1711235-1711285	NH-A	brain:	n/a
15	chr8:1711235-1711285	HCF	heart:	n/a
16	chr8:1711235-1711285	NHBE	bronchial:	n/a
17	chr8:1711235-1711285	HepG2	liver:	n/a
18	chr8:1711235-1711285	MCF-7	breast:	n/a
19	chr8:1711235-1711285	U87	brain:	n/a
20	chr8:1711235-1711285	SK-N-MC	brain:	n/a
21	chr8:1711235-1711285	NT2-D1	testis:	n/a
22	chr8:1711235-1711285	K562	blood:	n/a
23	chr8:1711235-1711285	Jurkat	blood:	n/a
24	chr8:1711235-1711285	HAEpiC	amniotic membrane:	n/a
25	chr8:1711235-1711285	AG04449	skin:	fetal
26	chr8:1711235-1711285	AG10803	skin:	n/a
27	chr8:1711235-1711285	Hepatocyte	liver:	n/a
28	chr8:1711235-1711285	HCT-116	colon:	n/a
29	chr8:1711235-1711285	SKMC	muscle:	n/a
30	chr8:1711235-1711285	HUVEC	blood vessel:	n/a
31	chr8:1711235-1711285	PANC-1	pancreas:	n/a
32	chr8:1711235-1711285	HL-60	blood:	n/a
33	chr8:1711235-1711285	PrEC	prostate:	n/a
34	chr8:1711235-1711285	SK-N-SH	brain:	n/a
35	chr8:1711235-1711285	HEK293	kidney:	embryo
36	chr8:1711235-1711285	HNPCEpiC	eye:	n/a
37	chr8:1711235-1711285	Hela-S3	cervix:	n/a
38	chr8:1711235-1711285	GM12878	blood:	n/a
39	chr8:1711235-1711285	SAEC	small airway:	n/a
40	chr8:1711235-1711285	HPAEpiC	pulmonary alveolar:	n/a
41	chr8:1711235-1711285	GM12892	blood:	n/a
42	chr8:1711235-1711285	NB4	blood:	n/a
43	chr8:1711235-1711285	SK-N-SH_RA	brain:	n/a
44	chr8:1711235-1711285	HCM	heart:	n/a
45	chr8:1711235-1711285	AoSMC	blood vessel:	n/a
46	chr8:1711235-1711285	MCF10A-Er-Src	breast:	n/a
47	chr8:1711235-1711285	CMK	blood:	n/a
48	chr8:1711235-1711285	BE2_C	brain:	n/a
49	chr8:1711235-1711285	HCPEpiC	choroid plexus:	n/a
50	chr8:1711235-1711285	GM06990	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:1710901..1715165-chr8:1763143..1767602,4	K562	blood:
2	chr17:38219023..38219851-chr8:1710924..1711761,2	Hela-S3	cervix:
3	chr8:1711111..1712724-chr8:1772703..1775383,2	MCF-7	breast:
4	chr8:1702392..1708895-chr8:1709221..1714010,17	MCF-7	breast:

No data

Variant related genes	Relation type
CLN8	TF binding region
CLN8	CpG island
ENSG00000126351	Chromatin interaction
ENSG00000104728	Chromatin interaction
ENSG00000182372	Chromatin interaction
ENSG00000207826	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10087654	0.97[ASN][1000 genomes]
rs10089222	0.81[ASN][1000 genomes]
rs10097891	0.86[ASN][1000 genomes]
rs10100341	0.84[ASN][1000 genomes]
rs10102731	0.97[ASN][1000 genomes]
rs10105317	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10106153	0.90[ASN][1000 genomes]
rs10113471	0.84[ASN][1000 genomes]
rs10481354	0.95[ASN][1000 genomes]
rs11136421	0.85[ASN][1000 genomes]
rs11136422	0.85[ASN][1000 genomes]
rs11136424	0.93[ASN][1000 genomes]
rs11778824	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12335115	0.90[ASN][1000 genomes]
rs12674711	0.87[ASN][1000 genomes]
rs13251071	0.85[ASN][1000 genomes]
rs13256424	0.85[ASN][1000 genomes]
rs13261755	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13282161	0.88[ASN][1000 genomes]
rs2293977	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28376731	0.91[ASN][1000 genomes]
rs2957085	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2977197	0.84[ASN][1000 genomes]
rs35062922	0.87[ASN][1000 genomes]
rs3812477	0.83[ASN][1000 genomes]
rs4242538	0.86[ASN][1000 genomes]
rs4370560	0.96[ASN][1000 genomes]
rs4372027	0.96[ASN][1000 genomes]
rs4595147	0.93[ASN][1000 genomes]
rs4639549	0.96[ASN][1000 genomes]
rs4875806	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4875889	0.84[ASN][1000 genomes]
rs4875957	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4875958	0.90[ASN][1000 genomes]
rs4876133	0.81[ASN][1000 genomes]
rs6558518	0.88[ASN][1000 genomes]
rs6558520	0.89[ASN][1000 genomes]
rs6558521	0.90[ASN][1000 genomes]
rs6558522	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6558523	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6558524	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6558525	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6558526	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6558527	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6558528	0.89[ASN][1000 genomes]
rs6558530	0.87[ASN][1000 genomes]
rs6558531	0.96[ASN][1000 genomes]
rs6558532	0.96[ASN][1000 genomes]
rs6558533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6558534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6558535	0.98[ASN][1000 genomes]
rs6558538	0.83[AMR][1000 genomes]
rs6981804	0.90[ASN][1000 genomes]
rs6982516	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6984632	0.87[ASN][1000 genomes]
rs6986102	0.89[ASN][1000 genomes]
rs6991773	0.84[ASN][1000 genomes]
rs6991783	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6993706	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7000162	0.91[ASN][1000 genomes]
rs7001282	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7005592	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7005699	0.90[ASN][1000 genomes]
rs7008465	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7010616	0.85[AMR][1000 genomes]
rs7014327	0.84[ASN][1000 genomes]
rs7014823	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7015858	0.84[ASN][1000 genomes]
rs71499040	0.94[ASN][1000 genomes]
rs730377	0.96[ASN][1000 genomes]
rs730379	0.95[ASN][1000 genomes]
rs7341635	0.85[ASN][1000 genomes]
rs7459507	0.87[ASN][1000 genomes]
rs7460230	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7460287	0.96[ASN][1000 genomes]
rs7460365	0.89[ASN][1000 genomes]
rs7460866	0.91[ASN][1000 genomes]
rs7460972	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7461159	0.93[ASN][1000 genomes]
rs7461259	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7461600	0.91[ASN][1000 genomes]
rs7463876	0.95[ASN][1000 genomes]
rs7463879	0.93[ASN][1000 genomes]
rs7465178	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7818406	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7822816	0.95[ASN][1000 genomes]
rs7827009	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7827285	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7828950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7838456	0.96[ASN][1000 genomes]
rs7842425	0.95[ASN][1000 genomes]
rs7844748	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7846610	0.95[ASN][1000 genomes]
rs9022	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889697	chr8:1238564-1861971	Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1031375	chr8:1320657-1722050	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv889704	chr8:1563904-1965389	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv889707	chr8:1581839-1920461	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv889708	chr8:1581839-1965389	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv889709	chr8:1581839-1965389	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv889711	chr8:1591412-1904157	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv889714	chr8:1616718-1965389	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv934075	chr8:1626857-1736355	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1034490	chr8:1654716-1782467	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv609527	chr8:1681733-1753497	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
13	nsv870096	chr8:1682851-1767342	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
14	nsv465274	chr8:1685064-1728292	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv609528	chr8:1685064-1728292	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv532892	chr8:1687433-1839578	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
17	esv2755149	chr8:1689290-1755281	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
18	nsv465275	chr8:1697086-1768004	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
19	nsv609529	chr8:1697086-1768004	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
20	nsv465276	chr8:1701432-1777571	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
21	nsv609530	chr8:1701432-1777571	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
22	esv3358001	chr8:1710645-1712743	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	esv3371041	chr8:1710770-1713318	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs13540	CTD-2336O2.1	cis	Adipose Subcutaneous	GTEx
rs13540	CTD-2336O2.1	cis	Thyroid	GTEx
rs13540	CTD-2336O2.1	cis	Artery Tibial	GTEx
rs13540	CTD-2336O2.1	cis	Muscle Skeletal	GTEx
rs13540	CTD-2336O2.1	cis	Esophagus Muscularis	GTEx
rs13540	CTD-2336O2.1	cis	Nerve Tibial	GTEx
rs13540	CTD-2336O2.1	cis	lung	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1710400-1711400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:1710400-1712200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:1710600-1711400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr8:1710600-1711400	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr8:1710600-1711400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr8:1710600-1711400	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr8:1710600-1711400	Flanking Active TSS	Liver	Liver
8	chr8:1710600-1711400	Active TSS	Fetal Kidney	kidney
9	chr8:1710600-1711400	Enhancers	Spleen	Spleen
10	chr8:1710600-1712200	Active TSS	Stomach Smooth Muscle	stomach
11	chr8:1710600-1712400	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr8:1710600-1712600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:1710600-1712600	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr8:1710600-1712600	Active TSS	Placenta Amnion	Placenta Amnion
15	chr8:1710600-1712800	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr8:1710600-1713000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr8:1710600-1713000	Active TSS	Ovary	ovary
18	chr8:1710600-1713200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr8:1710600-1713400	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr8:1710600-1713400	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr8:1710600-1713400	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr8:1710600-1713600	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr8:1710600-1714000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:1710800-1711400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr8:1710800-1711400	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr8:1710800-1711400	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr8:1710800-1711400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr8:1710800-1711400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr8:1710800-1711400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr8:1710800-1711400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr8:1710800-1711400	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr8:1710800-1711400	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr8:1710800-1711400	Flanking Active TSS	Fetal Thymus	thymus
34	chr8:1710800-1712000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:1710800-1712400	Active TSS	Psoas Muscle	Psoas
36	chr8:1710800-1712600	Active TSS	H1 Cell Line	embryonic stem cell
37	chr8:1710800-1712600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:1710800-1712600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:1710800-1712600	Active TSS	Placenta	Placenta
40	chr8:1710800-1712600	Active TSS	Lung	lung
41	chr8:1710800-1712600	Active TSS	Right Atrium	heart
42	chr8:1710800-1712800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:1710800-1712800	Active TSS	Aorta	Aorta
44	chr8:1710800-1712800	Active TSS	Fetal Intestine Large	intestine
45	chr8:1710800-1713000	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr8:1710800-1713000	Active TSS	NHDF-Ad	bronchial
47	chr8:1710800-1713200	Active TSS	H9 Cell Line	embryonic stem cell
48	chr8:1710800-1713200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr8:1710800-1713200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:1710800-1713200	Active TSS	Gastric	stomach

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