Variant report

Variant	rs7460287
Chromosome Location	chr8:1708274-1708275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:81)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:81 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr8:1707965-1708970	K562	blood:	n/a	n/a
2	HCFC1	chr8:1708050-1708741	K562	blood:	n/a	n/a
3	EGR1	chr8:1708271-1708658	K562	blood:	n/a	n/a
4	MAX	chr8:1708021-1709081	K562	blood:	n/a	n/a
5	STAT5A	chr8:1708110-1708810	K562	blood:	n/a	n/a
6	POLR2A	chr8:1707862-1709323	MCF10A-Er-Src	breast:	n/a	n/a
7	PML	chr8:1707985-1708756	K562	blood:	n/a	n/a
8	TRIM28	chr8:1707881-1708768	K562	blood:	n/a	n/a
9	POLR2A	chr8:1708130-1708717	H1-neurons	neurons:	n/a	n/a
10	POLR2A	chr8:1704744-1714404	K562	blood:	n/a	n/a
11	POLR2A	chr8:1706662-1711460	PBDE	blood:	n/a	n/a
12	IRF1	chr8:1708136-1708721	K562	blood:	n/a	n/a
13	GATA2	chr8:1708233-1708627	K562	blood:	n/a	n/a
14	BACH1	chr8:1708143-1708723	K562	blood:	n/a	n/a
15	RCOR1	chr8:1707170-1708627	K562	blood:	n/a	n/a
16	CEBPD	chr8:1708185-1708752	K562	blood:	n/a	n/a
17	JUND	chr8:1707146-1708914	K562	blood:	n/a	n/a
18	POLR2A	chr8:1708082-1708740	K562	blood:	n/a	n/a
19	GATA1	chr8:1706787-1709372	K562	blood:	n/a	n/a
20	EP300	chr8:1707879-1708785	K562	blood:	n/a	n/a
21	TEAD4	chr8:1708067-1708927	K562	blood:	n/a	n/a
22	GATA1	chr8:1706918-1709172	PBDE	blood:	n/a	n/a
23	ZNF384	chr8:1708103-1709333	K562	blood:	n/a	n/a
24	POLR2A	chr8:1708248-1708689	U87	brain:	n/a	n/a
25	BHLHE40	chr8:1707243-1709127	K562	blood:	n/a	n/a
26	MAX	chr8:1708130-1708960	K562	blood:	n/a	n/a
27	TBL1XR1	chr8:1708080-1709072	K562	blood:	n/a	n/a
28	ZC3H11A	chr8:1707965-1708995	K562	blood:	n/a	n/a
29	USF1	chr8:1708216-1708954	K562	blood:	n/a	n/a
30	MAFF	chr8:1707890-1708969	K562	blood:	n/a	n/a
31	TBL1XR1	chr8:1707892-1709018	K562	blood:	n/a	n/a
32	CBX3	chr8:1707984-1708744	K562	blood:	n/a	n/a
33	POLR2A	chr8:1707695-1709593	MCF10A-Er-Src	breast:	n/a	n/a
34	CUX1	chr8:1707716-1708860	K562	blood:	n/a	n/a
35	CBX3	chr8:1708155-1708637	K562	blood:	n/a	n/a
36	POLR2A	chr8:1708170-1708702	H1-neurons	neurons:	n/a	n/a
37	EP300	chr8:1708070-1708854	K562	blood:	n/a	n/a
38	TEAD4	chr8:1707974-1708951	K562	blood:	n/a	n/a
39	YY1	chr8:1708215-1708854	K562	blood:	n/a	chr8:1708525-1708536 chr8:1708704-1708712 chr8:1708702-1708710
40	MYC	chr8:1708090-1709137	K562	blood:	n/a	n/a
41	JUN	chr8:1705809-1709184	K562	blood:	n/a	n/a
42	MAX	chr8:1708180-1708972	K562	blood:	n/a	n/a
43	POLR2A	chr8:1708179-1708708	K562	blood:	n/a	n/a
44	POLR2A	chr8:1707431-1708806	K562	blood:	n/a	n/a
45	UBTF	chr8:1708043-1709057	K562	blood:	n/a	n/a
46	TAF1	chr8:1708157-1708765	K562	blood:	n/a	n/a
47	HMGN3	chr8:1708259-1708625	K562	blood:	n/a	n/a
48	MAFK	chr8:1707708-1709010	K562	blood:	n/a	n/a
49	ZMIZ1	chr8:1708257-1708980	K562	blood:	n/a	n/a
50	POLR2A	chr8:1708030-1708710	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:1702544..1704176-chr8:1706755..1708609,2	MCF-7	breast:
2	chr8:1702392..1708895-chr8:1709221..1714010,17	MCF-7	breast:
3	chr8:1708066..1710813-chr8:1745165..1747310,2	MCF-7	breast:
4	chr8:1690439..1692118-chr8:1706880..1708703,2	MCF-7	breast:
5	chr8:1681796..1686732-chr8:1704250..1709938,6	K562	blood:
6	chr8:1687352..1688981-chr8:1706866..1709759,2	K562	blood:
7	chr8:1696563..1699440-chr8:1706967..1709806,2	MCF-7	breast:
8	chr8:1704279..1706282-chr8:1706404..1709103,2	MCF-7	breast:
9	chr8:1656737..1659589-chr8:1707662..1709873,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ERICH1-7	chr8:1706374-1708613	NONHSAT124678

No data

Variant related genes	Relation type
CLN8	TF binding region
ENSG00000182372	Chromatin interaction
ENSG00000253982	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10087654	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10095548	0.82[ASN][1000 genomes]
rs10095696	0.82[ASN][1000 genomes]
rs10097891	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10100341	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10102731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10105317	0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10106153	0.93[ASN][1000 genomes]
rs10109098	0.83[ASN][1000 genomes]
rs10113471	0.88[ASN][1000 genomes]
rs10481354	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11136421	0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11136422	0.89[ASN][1000 genomes]
rs11136424	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11778824	0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12335115	0.92[ASN][1000 genomes]
rs12335117	0.80[ASN][1000 genomes]
rs12674711	0.91[ASN][1000 genomes]
rs13251071	0.87[ASN][1000 genomes]
rs13256424	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13261755	0.88[ASN][1000 genomes]
rs13282161	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13540	0.96[ASN][1000 genomes]
rs2293977	0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs28376731	0.94[ASN][1000 genomes]
rs2957085	0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2977197	0.86[ASN][1000 genomes]
rs35062922	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3812477	0.80[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4242538	0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4242539	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs4370560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4595147	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4639549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4875806	0.92[ASN][1000 genomes]
rs4875889	0.88[ASN][1000 genomes]
rs4875957	0.92[ASN][1000 genomes]
rs4875958	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4876133	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6558518	0.92[ASN][1000 genomes]
rs6558520	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6558521	0.93[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6558522	0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6558523	0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs6558524	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6558525	0.93[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6558526	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6558527	0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6558528	0.91[ASN][1000 genomes]
rs6558530	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6558531	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6558532	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6558533	0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6558534	0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6558535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6558538	0.80[ASN][1000 genomes]
rs6981804	0.93[ASN][1000 genomes]
rs6982516	0.93[ASN][1000 genomes]
rs6984632	0.91[ASN][1000 genomes]
rs6986102	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6991773	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6991783	0.86[ASN][1000 genomes]
rs6993706	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7000162	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7001282	0.93[ASN][1000 genomes]
rs7005592	0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7005699	0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7008465	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7014327	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7014823	0.86[ASN][1000 genomes]
rs7015858	0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71499040	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs730377	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730379	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7341635	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7459507	0.91[ASN][1000 genomes]
rs7460230	0.90[ASN][1000 genomes]
rs7460365	0.93[ASN][1000 genomes]
rs7460866	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7460972	0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs7461159	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7461259	0.88[ASN][1000 genomes]
rs7461600	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7463876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7463879	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7465178	0.91[ASN][1000 genomes]
rs7818406	0.84[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7822816	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7827009	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7827285	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7828950	0.99[ASN][1000 genomes]
rs7838456	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842425	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7844748	0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7845723	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs7846610	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9022	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889697	chr8:1238564-1861971	Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1031375	chr8:1320657-1722050	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv889704	chr8:1563904-1965389	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv889707	chr8:1581839-1920461	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv889708	chr8:1581839-1965389	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv889709	chr8:1581839-1965389	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv889711	chr8:1591412-1904157	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv889714	chr8:1616718-1965389	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv934075	chr8:1626857-1736355	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1034490	chr8:1654716-1782467	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv609527	chr8:1681733-1753497	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
13	nsv870096	chr8:1682851-1767342	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
14	nsv465274	chr8:1685064-1728292	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv609528	chr8:1685064-1728292	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv532892	chr8:1687433-1839578	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
17	esv2755149	chr8:1689290-1755281	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
18	nsv465275	chr8:1697086-1768004	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
19	nsv609529	chr8:1697086-1768004	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
20	nsv465276	chr8:1701432-1777571	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
21	nsv609530	chr8:1701432-1777571	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7460287	CTD-2336O2.1	cis	Thyroid	GTEx
rs7460287	CTD-2336O2.1	cis	Nerve Tibial	GTEx
rs7460287	CTD-2336O2.1	cis	Adipose Subcutaneous	GTEx
rs7460287	CTD-2336O2.1	cis	Esophagus Muscularis	GTEx
rs7460287	CTD-2336O2.1	cis	Muscle Skeletal	GTEx
rs7460287	CTD-2336O2.1	cis	Artery Tibial	GTEx
rs7460287	CLN8	cis	multi-tissue	Pritchard

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1704000-1708600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:1704000-1710800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:1704200-1708600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:1704200-1710600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:1704200-1710600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:1704200-1710600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:1704400-1708800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:1704400-1710400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:1704400-1710600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:1704400-1710600	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:1704400-1710600	Weak transcription	HUVEC	blood vessel
12	chr8:1704400-1710600	Weak transcription	NH-A	brain
13	chr8:1704400-1710600	Weak transcription	Osteobl	bone
14	chr8:1704600-1708600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:1704600-1710400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:1704600-1710400	Weak transcription	NHLF	lung
17	chr8:1704600-1710600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:1704800-1708400	Weak transcription	HMEC	breast
19	chr8:1704800-1710600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:1705400-1709600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:1705400-1710400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:1705400-1710600	Weak transcription	HSMMtube	muscle
23	chr8:1705600-1709400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:1705600-1710400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr8:1705600-1710400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:1705600-1710400	Weak transcription	Left Ventricle	heart
27	chr8:1705600-1710600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:1705600-1710600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr8:1705800-1710600	Weak transcription	NHDF-Ad	bronchial
30	chr8:1706000-1709000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr8:1706600-1708400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:1707000-1710600	Weak transcription	Hela-S3	cervix
33	chr8:1707200-1708600	Enhancers	Placenta	Placenta
34	chr8:1707400-1708400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:1707400-1708400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr8:1707400-1708400	Bivalent Enhancer	Fetal Heart	heart
37	chr8:1707400-1710800	Enhancers	Fetal Thymus	thymus
38	chr8:1707600-1708400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr8:1707600-1708400	Genic enhancers	NHEK	skin
40	chr8:1707600-1708600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr8:1707600-1709200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr8:1707600-1710600	Enhancers	Thymus	Thymus
43	chr8:1707800-1708400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:1707800-1708400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:1707800-1708400	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr8:1707800-1708400	Enhancers	Fetal Stomach	stomach
47	chr8:1707800-1708600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr8:1707800-1709000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr8:1707800-1709000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr8:1707800-1709000	Bivalent Enhancer	Fetal Lung	lung

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