Variant report

Variant	rs1354355
Chromosome Location	chr4:173174712-173174713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10010828	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10012225	0.82[CHB][hapmap]
rs10012505	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs10049623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1097438	0.85[ASN][1000 genomes]
rs12504501	0.88[ASN][1000 genomes]
rs13102395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1546331	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs1565557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17058106	0.82[CHB][hapmap]
rs17058160	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1812424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202281	0.82[CHB][hapmap]
rs2332503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28635685	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58932805	0.88[ASN][1000 genomes]
rs6553612	0.82[CHB][hapmap]
rs6553614	0.82[CHB][hapmap]
rs6825516	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs713350	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs765318	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs765319	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7677333	0.82[CHB][hapmap]
rs7679101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs836306	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs836310	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs836321	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs836322	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs836326	1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs9312518	0.81[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs961474	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs961475	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs973599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9991827	0.88[CEU][hapmap]
rs9997484	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1025193	chr4:173145426-173267314	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv537360	chr4:173145426-173267314	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173173800-173175800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:173173800-173176000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:173174600-173175800	Enhancers	Brain Germinal Matrix	brain

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