Variant report

Variant	rs6553614
Chromosome Location	chr4:173098264-173098265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173077162..173078692-chr4:173096029..173098571,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10010828	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10012225	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10012505	0.80[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs10049623	0.82[CHB][hapmap]
rs12644997	0.85[CEU][hapmap]
rs13102395	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs13110849	0.80[CHD][hapmap]
rs1354355	0.82[CHB][hapmap]
rs1354357	0.85[CEU][hapmap]
rs1491619	0.82[CEU][hapmap]
rs1565557	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs17058106	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs17058160	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs1812424	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2202281	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28431282	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28494704	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28624994	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3886930	0.80[CHD][hapmap]
rs6553612	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6553616	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713350	0.81[CEU][hapmap]
rs765318	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs765319	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs7663336	0.80[CHD][hapmap]
rs7677333	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7679101	0.82[CHB][hapmap]
rs7697913	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs836306	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs836310	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs836321	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs836322	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs836326	0.81[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs9312518	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap]
rs961474	0.80[CEU][hapmap]
rs961475	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs973599	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs9995021	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9997484	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1019896	chr4:173080612-173136826	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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