Variant report
| Variant | rs1354389 |
|---|---|
| Chromosome Location | chr4:21678252-21678253 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13125607 | 0.96[ASN][1000 genomes] |
| rs1503988 | 0.96[ASN][1000 genomes] |
| rs1503989 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs16871492 | 1.00[CEU][hapmap] |
| rs16871499 | 1.00[CEU][hapmap] |
| rs16871502 | 1.00[CEU][hapmap] |
| rs16871505 | 1.00[CEU][hapmap] |
| rs16871508 | 1.00[CEU][hapmap] |
| rs16871511 | 1.00[CEU][hapmap] |
| rs16871514 | 1.00[CEU][hapmap] |
| rs28503364 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs41397149 | 1.00[CEU][hapmap] |
| rs41463847 | 1.00[CEU][hapmap] |
| rs41500944 | 1.00[CEU][hapmap] |
| rs56173031 | 0.86[EUR][1000 genomes] |
| rs6822652 | 0.96[ASN][1000 genomes] |
| rs6843752 | 1.00[CEU][hapmap] |
| rs6843837 | 1.00[CEU][hapmap] |
| rs6848885 | 1.00[CEU][hapmap] |
| rs6849321 | 1.00[CEU][hapmap] |
| rs73254386 | 0.82[EUR][1000 genomes] |
| rs73254387 | 0.82[EUR][1000 genomes] |
| rs73256510 | 0.96[EUR][1000 genomes] |
| rs73256511 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73256512 | 0.96[EUR][1000 genomes] |
| rs7654710 | 1.00[CEU][hapmap] |
| rs7655708 | 1.00[CEU][hapmap] |
| rs7658813 | 0.96[ASN][1000 genomes] |
| rs7679874 | 1.00[CEU][hapmap] |
| rs978535 | 0.89[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs978536 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829880 | chr4:21492426-21693816 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
