Variant report

Variant	rs73254386
Chromosome Location	chr4:21626168-21626169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10011740	1.00[ASN][1000 genomes]
rs1394135	1.00[ASN][1000 genomes]
rs1394136	1.00[ASN][1000 genomes]
rs16871492	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16871505	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871508	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871511	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871514	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41397149	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41500944	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155919	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56186155	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56408419	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59586361	0.96[EUR][1000 genomes]
rs60492426	0.96[EUR][1000 genomes]
rs6448062	1.00[ASN][1000 genomes]
rs6813304	0.96[EUR][1000 genomes]
rs6824316	0.86[EUR][1000 genomes]
rs6824702	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6824711	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836213	0.96[EUR][1000 genomes]
rs6843752	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6843837	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6844068	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848885	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6849321	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252231	0.96[EUR][1000 genomes]
rs73252235	0.96[EUR][1000 genomes]
rs73252236	0.96[EUR][1000 genomes]
rs73252249	0.96[EUR][1000 genomes]
rs73252255	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252256	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252257	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252260	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252261	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252264	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252265	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73252266	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252267	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252268	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252269	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252271	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252272	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252288	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252289	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252290	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254304	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254305	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254306	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254307	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254310	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254311	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254313	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73254387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73256510	0.85[EUR][1000 genomes]
rs7657287	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657482	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7670800	1.00[ASN][1000 genomes]
rs7679874	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681243	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681823	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21609400-21628000	Weak transcription	Ovary	ovary
2	chr4:21624000-21627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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