Variant report

Variant	rs7670800
Chromosome Location	chr4:21615268-21615269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PACRGL-3	chr4:21614955-21615351	ENSG00000250092.2

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10006027	0.93[CEU][hapmap]
rs10009713	0.86[CEU][hapmap];0.88[AMR][1000 genomes]
rs10011740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021863	0.93[CEU][hapmap]
rs1158161	0.87[CEU][hapmap]
rs11730697	0.86[CEU][hapmap]
rs11736408	1.00[CHB][hapmap]
rs11737456	1.00[JPT][hapmap]
rs11946639	0.85[CEU][hapmap]
rs12507996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1394135	0.93[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394136	0.93[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16871499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16871508	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16871511	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16871514	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1827593	0.85[CEU][hapmap]
rs2202312	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs2340	0.87[CEU][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs358565	0.83[CEU][hapmap]
rs358830	0.86[CEU][hapmap]
rs41397149	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41463847	1.00[JPT][hapmap]
rs41500944	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs429783	0.86[CEU][hapmap]
rs4385045	0.90[AMR][1000 genomes]
rs4697227	1.00[JPT][hapmap]
rs56155919	1.00[ASN][1000 genomes]
rs56186155	0.89[ASN][1000 genomes]
rs56408419	1.00[ASN][1000 genomes]
rs6448062	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448064	0.93[CEU][hapmap]
rs6448065	0.81[CEU][hapmap]
rs6824702	0.90[ASN][1000 genomes]
rs6824711	1.00[ASN][1000 genomes]
rs6840297	1.00[JPT][hapmap]
rs6843682	1.00[JPT][hapmap]
rs6843752	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6843837	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6844068	0.89[ASN][1000 genomes]
rs6847761	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6848328	0.87[CEU][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6848885	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6849321	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73252255	0.89[ASN][1000 genomes]
rs73252256	0.89[ASN][1000 genomes]
rs73252257	0.89[ASN][1000 genomes]
rs73252260	0.89[ASN][1000 genomes]
rs73252261	0.89[ASN][1000 genomes]
rs73252264	0.89[ASN][1000 genomes]
rs73252265	0.89[ASN][1000 genomes]
rs73252266	1.00[ASN][1000 genomes]
rs73252267	1.00[ASN][1000 genomes]
rs73252268	1.00[ASN][1000 genomes]
rs73252269	1.00[ASN][1000 genomes]
rs73252271	1.00[ASN][1000 genomes]
rs73252272	1.00[ASN][1000 genomes]
rs73252288	1.00[ASN][1000 genomes]
rs73252289	1.00[ASN][1000 genomes]
rs73252290	1.00[ASN][1000 genomes]
rs73254304	1.00[ASN][1000 genomes]
rs73254305	1.00[ASN][1000 genomes]
rs73254306	1.00[ASN][1000 genomes]
rs73254307	1.00[ASN][1000 genomes]
rs73254310	1.00[ASN][1000 genomes]
rs73254311	1.00[ASN][1000 genomes]
rs73254313	1.00[ASN][1000 genomes]
rs73254386	1.00[ASN][1000 genomes]
rs7654710	1.00[JPT][hapmap]
rs7655708	1.00[JPT][hapmap]
rs7657287	1.00[ASN][1000 genomes]
rs7657482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7664005	0.86[AMR][1000 genomes]
rs7677329	1.00[JPT][hapmap]
rs7679874	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7681243	1.00[ASN][1000 genomes]
rs7681823	1.00[ASN][1000 genomes]
rs9994077	0.87[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21609400-21628000	Weak transcription	Ovary	ovary

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