Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10006027	0.92[CEU][hapmap]
rs10009713	1.00[CEU][hapmap]
rs10025434	1.00[CEU][hapmap]
rs1021863	0.92[CEU][hapmap]
rs1158161	1.00[CEU][hapmap]
rs11730697	1.00[CEU][hapmap]
rs1394135	0.92[CEU][hapmap]
rs1394136	0.92[CEU][hapmap]
rs1827593	1.00[CEU][hapmap]
rs2202312	1.00[CEU][hapmap]
rs2340	0.85[CEU][hapmap]
rs34906987	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs358563	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs358565	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs358830	1.00[CEU][hapmap]
rs358831	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs358832	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs358834	0.91[CEU][hapmap];0.82[YRI][hapmap]
rs429783	1.00[CEU][hapmap]
rs6448062	1.00[CEU][hapmap]
rs6847761	1.00[CEU][hapmap]
rs6848328	1.00[CEU][hapmap]
rs7670800	0.85[CEU][hapmap]
rs9994077	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878750	chr4:21492445-21520250	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21497000-21514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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