Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10006027	0.86[CEU][hapmap]
rs10009713	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10011740	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10025434	1.00[CEU][hapmap]
rs1021863	0.86[CEU][hapmap]
rs1158161	1.00[CEU][hapmap]
rs11730697	1.00[CEU][hapmap]
rs11946639	1.00[CEU][hapmap]
rs1394135	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs1394136	0.86[CEU][hapmap];0.80[AMR][1000 genomes]
rs1503996	0.83[AMR][1000 genomes]
rs1827593	1.00[CEU][hapmap]
rs2202312	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2340	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs358565	1.00[CEU][hapmap]
rs358830	1.00[CEU][hapmap]
rs358834	0.85[CEU][hapmap]
rs358835	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs358837	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs429783	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4385045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6448062	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6848328	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7664005	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7670800	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9994077	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21609400-21628000	Weak transcription	Ovary	ovary

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