Variant report

Variant	rs429783
Chromosome Location	chr4:21572568-21572569
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10006027	0.93[CEU][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs10009713	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs10025434	1.00[CEU][hapmap]
rs1021863	0.93[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs1158161	1.00[CEU][hapmap]
rs11730697	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap]
rs11946639	1.00[CEU][hapmap]
rs1394135	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs1394136	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs17466300	0.84[MKK][hapmap]
rs17466461	0.84[MKK][hapmap]
rs1827593	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2202312	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2340	0.93[CEU][hapmap]
rs358565	1.00[CEU][hapmap]
rs358830	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs358831	0.85[EUR][1000 genomes]
rs358832	0.84[EUR][1000 genomes]
rs358834	0.92[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs358835	0.89[EUR][1000 genomes]
rs358837	0.89[EUR][1000 genomes]
rs4385045	0.85[EUR][1000 genomes]
rs6448062	1.00[CEU][hapmap]
rs6448064	0.81[CEU][hapmap];0.90[MEX][hapmap];0.87[MKK][hapmap]
rs6448065	0.86[CEU][hapmap]
rs6819420	1.00[YRI][hapmap]
rs6830109	0.84[MKK][hapmap]
rs6841093	0.84[MKK][hapmap]
rs6847761	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6848328	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7670800	0.86[CEU][hapmap]
rs9994077	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv997742	chr4:21515920-21575213	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1002353	chr4:21518045-21575213	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv1001219	chr4:21518045-21580423	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	esv2760860	chr4:21518045-21580435	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	nsv525271	chr4:21519577-21575623	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv470019	chr4:21519577-21576754	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv593805	chr4:21519577-21576754	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv461288	chr4:21562013-21575623	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv593807	chr4:21562013-21575623	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv593808	chr4:21566178-21577089	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs429783	DCAF16	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21571400-21577600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:21571600-21572600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:21571600-21575400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:21571800-21573000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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