Variant report
| Variant | rs6448065 |
|---|---|
| Chromosome Location | chr4:21633375-21633376 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10009713 | 0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10011740 | 0.84[AFR][1000 genomes] |
| rs1021863 | 0.93[CEU][hapmap] |
| rs1158161 | 0.81[CEU][hapmap] |
| rs11730697 | 0.86[CEU][hapmap] |
| rs1827593 | 0.85[CEU][hapmap] |
| rs2202312 | 0.81[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs2340 | 0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs358830 | 0.86[CEU][hapmap] |
| rs358835 | 0.80[EUR][1000 genomes] |
| rs358837 | 0.80[EUR][1000 genomes] |
| rs429783 | 0.86[CEU][hapmap] |
| rs4385045 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6448062 | 0.84[AFR][1000 genomes] |
| rs6448064 | 0.93[CEU][hapmap] |
| rs6847761 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6848328 | 0.81[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7664005 | 0.82[AMR][1000 genomes] |
| rs7670800 | 0.81[CEU][hapmap];0.84[AFR][1000 genomes] |
| rs9994077 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829880 | chr4:21492426-21693816 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008716 | chr4:21580423-21633636 | Weak transcription Active TSS Enhancers Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003426 | chr4:21580423-21640350 | Active TSS Weak transcription Enhancers Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv461289 | chr4:21588298-21639516 | Active TSS Weak transcription Enhancers Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv593809 | chr4:21588298-21639516 | Enhancers Flanking Active TSS Weak transcription Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
