Variant report

Variant	rs12507996
Chromosome Location	chr4:21509004-21509005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21508722..21509309-chr4:21767490..21768052,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1013568	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs11732183	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736408	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737456	0.81[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102601	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1394135	1.00[JPT][hapmap]
rs1394136	1.00[JPT][hapmap]
rs16871492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871511	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871514	1.00[CHB][hapmap]
rs17466482	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs1824470	0.88[EUR][1000 genomes]
rs1841371	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs1841372	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs41397149	1.00[JPT][hapmap]
rs41463847	1.00[JPT][hapmap]
rs41500944	1.00[JPT][hapmap]
rs4697227	1.00[JPT][hapmap]
rs6448062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6827581	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs6840297	1.00[JPT][hapmap]
rs6843682	1.00[JPT][hapmap]
rs6843752	1.00[JPT][hapmap]
rs6843837	1.00[JPT][hapmap]
rs6848885	1.00[JPT][hapmap]
rs6849321	1.00[JPT][hapmap]
rs7654710	1.00[JPT][hapmap]
rs7655708	1.00[JPT][hapmap]
rs7657482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7670800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7677329	1.00[JPT][hapmap]
rs7679874	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9994077	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878750	chr4:21492445-21520250	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21497000-21514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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