Variant report

Variant	rs1355125
Chromosome Location	chr3:150808055-150808056
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150802084..150805067-chr3:150805477..150808143,2	MCF-7	breast:
2	chr3:150807677..150811549-chr3:150812693..150816960,6	MCF-7	breast:
3	chr3:150806500..150808357-chr3:150818447..150820046,2	MCF-7	breast:
4	chr3:150806580..150808484-chr3:150808871..150811631,2	K562	blood:

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11707833	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11713719	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11714357	1.00[AFR][1000 genomes]
rs11714651	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11715095	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11715411	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16863149	1.00[EUR][1000 genomes]
rs16863153	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16863203	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16863238	1.00[EUR][1000 genomes]
rs16863239	1.00[EUR][1000 genomes]
rs3732756	1.00[EUR][1000 genomes]
rs58593708	1.00[EUR][1000 genomes]
rs906766	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2753152	chr3:150773248-150810545	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150805200-150808200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:150805400-150812000	Weak transcription	Thymus	Thymus
3	chr3:150805600-150809000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:150805600-150811400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:150805600-150811600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:150805800-150809000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:150805800-150809800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:150805800-150811200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:150806000-150808400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:150806000-150809400	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:150806000-150814400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:150806200-150809600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:150806600-150809400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:150806600-150819000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:150806800-150808600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:150806800-150809200	Weak transcription	Brain Anterior Caudate	brain
17	chr3:150806800-150809400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:150806800-150809600	Weak transcription	Dnd41	blood
19	chr3:150806800-150810400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:150806800-150812000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:150806800-150814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:150806800-150817800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:150807400-150809000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:150807400-150811000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:150807600-150808200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:150807800-150811000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr3:150807800-150811200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:150807800-150818400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:150808000-150809000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:150808000-150809200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:150808000-150809400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:150808000-150810000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:150808000-150811000	Weak transcription	Brain Substantia Nigra	brain
34	chr3:150808000-150814200	Weak transcription	Fetal Muscle Leg	muscle

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