Variant report

Variant	rs16863203
Chromosome Location	chr3:150889080-150889081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150886462..150889127-chr3:150925386..150928089,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11707833	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11713719	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11714357	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11714651	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11715095	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11715411	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1355125	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16863149	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16863153	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16863155	0.91[CHB][hapmap]
rs16863161	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16863204	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs16863227	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs16863238	1.00[EUR][1000 genomes]
rs16863239	0.83[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863305	1.00[YRI][hapmap]
rs3732756	0.81[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3732757	1.00[YRI][hapmap]
rs3821668	1.00[YRI][hapmap]
rs58593708	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs906766	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150873200-150910200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:150873600-150889600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:150873800-150890000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:150873800-150890000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:150874200-150896000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:150874600-150889200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:150874800-150900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
11	chr3:150878400-150890800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:150880400-150900200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:150880800-150900400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:150883800-150896000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:150884200-150906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:150884400-150893400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:150886000-150890800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:150886200-150889800	Enhancers	Primary B cells from peripheral blood	blood
19	chr3:150886200-150890400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr3:150886200-150890400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:150886200-150890400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:150886200-150890800	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:150886200-150890800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr3:150886200-150892400	Enhancers	Primary T cells from cord blood	blood
25	chr3:150886200-150893000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:150886600-150890200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr3:150886600-150890400	Enhancers	Fetal Thymus	thymus
28	chr3:150886800-150892600	Weak transcription	Liver	Liver
29	chr3:150887000-150889200	Enhancers	Fetal Muscle Leg	muscle
30	chr3:150887200-150889200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr3:150887600-150889200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:150887600-150889200	Enhancers	HSMM	muscle
33	chr3:150887600-150889600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:150887600-150890000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr3:150887600-150890000	Enhancers	Thymus	Thymus
36	chr3:150887600-150891000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr3:150887800-150889200	Enhancers	Spleen	Spleen
38	chr3:150887800-150889600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:150887800-150889600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:150888000-150889600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:150888000-150889600	Enhancers	GM12878-XiMat	blood
42	chr3:150888000-150890000	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr3:150888000-150890000	Enhancers	Primary B cells from cord blood	blood
44	chr3:150888000-150890200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr3:150888200-150890000	Enhancers	HepG2	liver
46	chr3:150888400-150889400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr3:150888400-150889800	Strong transcription	Fetal Intestine Small	intestine
48	chr3:150888400-150889800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr3:150888400-150890000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr3:150888400-150893800	Weak transcription	Small Intestine	intestine

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