Variant report

Variant	rs16863155
Chromosome Location	chr3:150818931-150818932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150818466..150820252-chr3:150830514..150832055,2	MCF-7	breast:
2	chr3:150806500..150808357-chr3:150818447..150820046,2	MCF-7	breast:
3	chr3:150812906..150816565-chr3:150818005..150820586,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10513385	0.83[EUR][1000 genomes]
rs10513386	0.83[EUR][1000 genomes]
rs11706385	0.82[ASN][1000 genomes]
rs11707833	0.82[ASN][1000 genomes]
rs11713719	0.91[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs11714357	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11714651	0.83[ASN][1000 genomes]
rs11715095	0.95[ASN][1000 genomes]
rs11715097	0.81[ASN][1000 genomes]
rs11715186	0.89[ASN][1000 genomes]
rs11718038	0.82[ASN][1000 genomes]
rs12636713	0.83[EUR][1000 genomes]
rs1355126	0.94[ASN][1000 genomes]
rs1431494	0.83[EUR][1000 genomes]
rs1431495	0.83[EUR][1000 genomes]
rs1431496	0.83[EUR][1000 genomes]
rs16863149	0.91[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs16863153	0.91[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs16863161	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16863203	0.91[CHB][hapmap]
rs16863204	0.83[EUR][1000 genomes]
rs16863208	1.00[EUR][1000 genomes]
rs16863223	0.83[EUR][1000 genomes]
rs16863227	0.91[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16863229	0.83[EUR][1000 genomes]
rs1993404	0.88[ASN][1000 genomes]
rs1995799	0.88[ASN][1000 genomes]
rs2043170	0.83[EUR][1000 genomes]
rs3732755	0.83[EUR][1000 genomes]
rs56151283	0.83[EUR][1000 genomes]
rs56350229	0.83[EUR][1000 genomes]
rs57748833	0.82[ASN][1000 genomes]
rs59669423	0.83[EUR][1000 genomes]
rs60749276	0.83[EUR][1000 genomes]
rs61099669	0.83[EUR][1000 genomes]
rs6772543	0.83[EUR][1000 genomes]
rs6775269	0.83[EUR][1000 genomes]
rs6802229	0.83[EUR][1000 genomes]
rs73016801	1.00[EUR][1000 genomes]
rs73018604	0.83[EUR][1000 genomes]
rs73018614	0.83[EUR][1000 genomes]
rs73018621	0.83[EUR][1000 genomes]
rs73018622	0.83[EUR][1000 genomes]
rs73018628	0.83[EUR][1000 genomes]
rs73018640	0.83[EUR][1000 genomes]
rs73018641	0.83[EUR][1000 genomes]
rs73019085	0.83[EUR][1000 genomes]
rs73019091	0.83[EUR][1000 genomes]
rs7615523	0.83[EUR][1000 genomes]
rs7616375	0.83[EUR][1000 genomes]
rs7650189	0.83[EUR][1000 genomes]
rs7650499	0.83[EUR][1000 genomes]
rs7650959	0.83[EUR][1000 genomes]
rs906766	0.91[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs9917673	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150806600-150819000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:150809800-150827400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:150811600-150821000	Weak transcription	Brain Substantia Nigra	brain
4	chr3:150811800-150819000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:150812000-150819000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:150812000-150819200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:150812000-150824800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:150812200-150819200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:150812200-150819200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:150812400-150819600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:150814800-150819000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:150814800-150819200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:150814800-150819200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:150814800-150819400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:150815200-150819000	Weak transcription	Fetal Heart	heart
16	chr3:150815600-150819000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:150815600-150819000	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:150815600-150819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:150818000-150819000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:150818000-150819000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:150818000-150823600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:150818400-150819400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:150818400-150820400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:150818400-150821000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:150818800-150820800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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