Variant report

Variant	rs16863227
Chromosome Location	chr3:150901456-150901457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150894791..150897872-chr3:150901090..150904016,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10513385	0.81[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10513386	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11707833	0.89[ASN][1000 genomes]
rs11713719	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11714357	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11714651	0.98[ASN][1000 genomes]
rs11715095	0.83[ASN][1000 genomes]
rs11715411	0.85[ASN][1000 genomes]
rs12106682	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs12636713	1.00[EUR][1000 genomes]
rs1355126	0.82[ASN][1000 genomes]
rs1431494	0.89[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1431495	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1431496	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16863153	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs16863155	0.91[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16863161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16863203	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs16863204	0.82[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863208	0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs16863219	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs16863223	0.81[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16863229	0.89[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863239	0.91[JPT][hapmap]
rs2043170	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3732755	1.00[EUR][1000 genomes]
rs3732756	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs41526349	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs4330297	0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56151283	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56350229	1.00[EUR][1000 genomes]
rs58593708	0.98[ASN][1000 genomes]
rs59669423	1.00[EUR][1000 genomes]
rs60620665	0.87[AFR][1000 genomes]
rs60749276	1.00[EUR][1000 genomes]
rs60966250	0.89[AFR][1000 genomes]
rs61099669	1.00[EUR][1000 genomes]
rs6772538	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6772543	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6775269	0.84[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794447	0.81[AFR][1000 genomes]
rs6802229	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73016712	0.87[AFR][1000 genomes]
rs73016789	0.89[AFR][1000 genomes]
rs73016801	0.83[EUR][1000 genomes]
rs73018604	1.00[EUR][1000 genomes]
rs73018614	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73018620	0.89[AFR][1000 genomes]
rs73018621	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73018622	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73018628	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73018640	1.00[EUR][1000 genomes]
rs73018641	1.00[EUR][1000 genomes]
rs73019085	1.00[EUR][1000 genomes]
rs73019091	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019099	0.81[AFR][1000 genomes]
rs7615523	1.00[EUR][1000 genomes]
rs7616375	1.00[EUR][1000 genomes]
rs7638986	0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs7650189	1.00[EUR][1000 genomes]
rs7650499	1.00[EUR][1000 genomes]
rs7650959	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs906766	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9917673	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150873200-150910200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
5	chr3:150884200-150906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:150889000-150904000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:150889200-150908200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:150889200-150914800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:150889400-150903600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:150889600-150904000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:150889600-150913800	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:150890600-150923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:150892400-150904200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:150894000-150904200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:150896200-150927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:150896400-150904400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:150896600-150918200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:150897200-150916200	Weak transcription	Fetal Intestine Small	intestine
19	chr3:150897600-150913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:150898600-150917200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:150899000-150917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:150899600-150902600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:150900200-150901600	Enhancers	HepG2	liver
24	chr3:150900200-150902400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr3:150900400-150902200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:150900400-150902200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr3:150900400-150910200	Weak transcription	Fetal Brain Female	brain
28	chr3:150900400-150917200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:150900600-150902200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:150900600-150904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:150900600-150904200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:150900600-150908400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:150900600-150917000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:150900800-150917200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:150901000-150901600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr3:150901000-150901800	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr3:150901000-150901800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr3:150901000-150908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:150901200-150907000	Weak transcription	Thymus	Thymus
40	chr3:150901200-150917600	Weak transcription	Fetal Thymus	thymus
41	chr3:150901200-150917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:150901400-150901600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr3:150901400-150901800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr3:150901400-150901800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:150901400-150902200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:150901400-150902200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:150901400-150902400	Weak transcription	Psoas Muscle	Psoas
48	chr3:150901400-150904200	Weak transcription	Aorta	Aorta
49	chr3:150901400-150908400	Weak transcription	Dnd41	blood
50	chr3:150901400-150910200	Weak transcription	Brain Hippocampus Middle	brain

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