Variant report

Variant	rs73018620
Chromosome Location	chr3:150900745-150900746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12106682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12631155	1.00[EUR][1000 genomes]
rs16863173	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16863204	0.89[AFR][1000 genomes]
rs16863219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863227	0.89[AFR][1000 genomes]
rs16863248	1.00[EUR][1000 genomes]
rs16863250	1.00[EUR][1000 genomes]
rs2870415	1.00[EUR][1000 genomes]
rs3821666	1.00[EUR][1000 genomes]
rs3960212	1.00[EUR][1000 genomes]
rs41526246	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41526349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58321514	1.00[EUR][1000 genomes]
rs60620665	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60816259	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60966250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440723	1.00[EUR][1000 genomes]
rs6440725	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6767615	1.00[EUR][1000 genomes]
rs6774659	1.00[EUR][1000 genomes]
rs6776934	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6777211	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6787551	1.00[EUR][1000 genomes]
rs6790244	1.00[EUR][1000 genomes]
rs6790349	1.00[EUR][1000 genomes]
rs6794447	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73009177	1.00[EUR][1000 genomes]
rs73012977	1.00[EUR][1000 genomes]
rs73012978	1.00[EUR][1000 genomes]
rs73012986	1.00[EUR][1000 genomes]
rs73012988	1.00[EUR][1000 genomes]
rs73012992	1.00[EUR][1000 genomes]
rs73013000	1.00[EUR][1000 genomes]
rs73014806	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73014871	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73016712	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73016789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019093	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73019099	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73021108	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73021116	1.00[EUR][1000 genomes]
rs73021129	1.00[EUR][1000 genomes]
rs73021144	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7618087	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7653225	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150873200-150910200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
5	chr3:150884200-150906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:150889000-150904000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:150889200-150908200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:150889200-150914800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:150889400-150903600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:150889600-150904000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:150889600-150913800	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:150890600-150923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:150892400-150904200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:150894000-150904200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:150896200-150927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:150896400-150904400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:150896600-150918200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:150897200-150916200	Weak transcription	Fetal Intestine Small	intestine
19	chr3:150897600-150913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:150898600-150917200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:150899000-150917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:150899400-150901000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:150899400-150901400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr3:150899600-150900800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr3:150899600-150902600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:150900000-150901000	Enhancers	Primary T cells from cord blood	blood
27	chr3:150900000-150901000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr3:150900000-150901000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:150900000-150901400	Enhancers	Fetal Lung	lung
30	chr3:150900200-150900800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:150900200-150900800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:150900200-150900800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr3:150900200-150901000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:150900200-150901200	Enhancers	Fetal Thymus	thymus
35	chr3:150900200-150901400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr3:150900200-150901400	Enhancers	Psoas Muscle	Psoas
37	chr3:150900200-150901600	Enhancers	HepG2	liver
38	chr3:150900200-150902400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr3:150900400-150900800	Enhancers	Aorta	Aorta
40	chr3:150900400-150901000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:150900400-150901000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:150900400-150901200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr3:150900400-150901400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:150900400-150901400	Enhancers	Fetal Heart	heart
45	chr3:150900400-150902200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr3:150900400-150902200	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr3:150900400-150910200	Weak transcription	Fetal Brain Female	brain
48	chr3:150900400-150917200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:150900600-150901200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:150900600-150901400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links