Variant report

Variant	rs73012988
Chromosome Location	chr3:150816285-150816286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150807677..150811549-chr3:150812693..150816960,6	MCF-7	breast:
2	chr3:150813043..150817753-chr3:150819414..150822906,4	MCF-7	breast:
3	chr3:150814792..150816660-chr3:150824326..150826641,2	MCF-7	breast:
4	chr3:150803142..150806355-chr3:150813532..150818047,7	MCF-7	breast:
5	chr3:150812906..150816565-chr3:150818005..150820586,3	K562	blood:
6	chr3:150808254..150810835-chr3:150814904..150817365,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12106682	1.00[EUR][1000 genomes]
rs12631155	1.00[EUR][1000 genomes]
rs16863173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863219	1.00[EUR][1000 genomes]
rs16863248	1.00[EUR][1000 genomes]
rs16863250	1.00[EUR][1000 genomes]
rs2870415	1.00[EUR][1000 genomes]
rs3821666	1.00[EUR][1000 genomes]
rs3960212	1.00[EUR][1000 genomes]
rs41526246	1.00[EUR][1000 genomes]
rs41526349	1.00[EUR][1000 genomes]
rs58321514	1.00[EUR][1000 genomes]
rs60620665	1.00[EUR][1000 genomes]
rs60816259	1.00[EUR][1000 genomes]
rs60966250	1.00[EUR][1000 genomes]
rs6440723	1.00[EUR][1000 genomes]
rs6440725	1.00[EUR][1000 genomes]
rs6767615	1.00[EUR][1000 genomes]
rs6774659	1.00[EUR][1000 genomes]
rs6776934	1.00[EUR][1000 genomes]
rs6777211	1.00[EUR][1000 genomes]
rs6787551	1.00[EUR][1000 genomes]
rs6790244	1.00[EUR][1000 genomes]
rs6790349	1.00[EUR][1000 genomes]
rs6794447	1.00[EUR][1000 genomes]
rs73009177	1.00[EUR][1000 genomes]
rs73012977	1.00[EUR][1000 genomes]
rs73012978	1.00[EUR][1000 genomes]
rs73012986	1.00[EUR][1000 genomes]
rs73012992	1.00[EUR][1000 genomes]
rs73013000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014806	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014871	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73014873	1.00[EUR][1000 genomes]
rs73016712	1.00[EUR][1000 genomes]
rs73016789	1.00[EUR][1000 genomes]
rs73018620	1.00[EUR][1000 genomes]
rs73019093	1.00[EUR][1000 genomes]
rs73019099	1.00[EUR][1000 genomes]
rs73021108	1.00[EUR][1000 genomes]
rs73021116	1.00[EUR][1000 genomes]
rs73021129	1.00[EUR][1000 genomes]
rs73021144	1.00[EUR][1000 genomes]
rs7610549	1.00[EUR][1000 genomes]
rs7618087	1.00[EUR][1000 genomes]
rs7638986	1.00[EUR][1000 genomes]
rs7653225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150806600-150819000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:150806800-150817800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:150807800-150818400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:150809800-150827400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:150811600-150821000	Weak transcription	Brain Substantia Nigra	brain
6	chr3:150811800-150819000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:150812000-150819000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:150812000-150819200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:150812000-150824800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:150812200-150819200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:150812200-150819200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:150812400-150819600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:150814400-150816400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:150814800-150818800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:150814800-150819000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:150814800-150819200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:150814800-150819200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:150814800-150819400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:150815200-150817600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:150815200-150819000	Weak transcription	Fetal Heart	heart
21	chr3:150815600-150818000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:150815600-150819000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:150815600-150819000	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:150815600-150819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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