Variant report

Variant	rs16863173
Chromosome Location	chr3:150826674-150826675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150824339..150827241-chr3:150830222..150833263,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12106682	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12631155	1.00[EUR][1000 genomes]
rs16863219	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16863248	1.00[EUR][1000 genomes]
rs16863250	1.00[EUR][1000 genomes]
rs2870415	1.00[EUR][1000 genomes]
rs3821666	1.00[EUR][1000 genomes]
rs3960212	1.00[EUR][1000 genomes]
rs41526246	1.00[EUR][1000 genomes]
rs41526349	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58321514	1.00[EUR][1000 genomes]
rs60620665	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60816259	1.00[EUR][1000 genomes]
rs60966250	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6440723	1.00[EUR][1000 genomes]
rs6440725	1.00[EUR][1000 genomes]
rs6767615	1.00[EUR][1000 genomes]
rs6774659	1.00[EUR][1000 genomes]
rs6776934	1.00[EUR][1000 genomes]
rs6777211	1.00[EUR][1000 genomes]
rs6787551	1.00[EUR][1000 genomes]
rs6790244	1.00[EUR][1000 genomes]
rs6790349	1.00[EUR][1000 genomes]
rs6794447	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73009177	1.00[EUR][1000 genomes]
rs73012977	1.00[EUR][1000 genomes]
rs73012978	1.00[EUR][1000 genomes]
rs73012986	1.00[EUR][1000 genomes]
rs73012988	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012992	1.00[EUR][1000 genomes]
rs73013000	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014871	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73014873	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73016712	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73016789	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73018620	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73019093	1.00[EUR][1000 genomes]
rs73019099	1.00[EUR][1000 genomes]
rs73021108	1.00[EUR][1000 genomes]
rs73021116	1.00[EUR][1000 genomes]
rs73021129	1.00[EUR][1000 genomes]
rs73021144	1.00[EUR][1000 genomes]
rs7610549	1.00[EUR][1000 genomes]
rs7618087	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7638986	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7653225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150809800-150827400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:150819800-150827600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:150819800-150847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:150820800-150840000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:150823200-150843000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:150823400-150826800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:150824400-150826800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:150824600-150826800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:150824800-150826800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:150825000-150827000	Enhancers	Brain Anterior Caudate	brain
11	chr3:150825000-150827200	Enhancers	Placenta	Placenta
12	chr3:150825200-150827400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:150825200-150828200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:150825800-150828000	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:150825800-150829000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:150826000-150827000	Weak transcription	Fetal Intestine Large	intestine
17	chr3:150826000-150831600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:150826000-150855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:150826200-150827000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:150826400-150827200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:150826400-150827200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:150826400-150827600	Active TSS	Ovary	ovary
23	chr3:150826400-150830600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:150826400-150863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:150826600-150827400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:150826600-150827800	Weak transcription	Fetal Intestine Small	intestine
27	chr3:150826600-150830200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:150826600-150830200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:150826600-150830800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:150826600-150846400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:150826600-150851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:150826600-150855000	Weak transcription	H1 Cell Line	embryonic stem cell

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