Variant report

Variant	rs73012977
Chromosome Location	chr3:150806437-150806438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150802084..150805067-chr3:150805477..150808143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12106682	1.00[EUR][1000 genomes]
rs12631155	1.00[EUR][1000 genomes]
rs16863173	1.00[EUR][1000 genomes]
rs16863219	1.00[EUR][1000 genomes]
rs16863248	1.00[EUR][1000 genomes]
rs16863250	1.00[EUR][1000 genomes]
rs2870415	1.00[EUR][1000 genomes]
rs3821666	1.00[EUR][1000 genomes]
rs3960212	1.00[EUR][1000 genomes]
rs41526246	1.00[EUR][1000 genomes]
rs41526349	1.00[EUR][1000 genomes]
rs58321514	1.00[EUR][1000 genomes]
rs60620665	1.00[EUR][1000 genomes]
rs60816259	1.00[EUR][1000 genomes]
rs60966250	1.00[EUR][1000 genomes]
rs6440723	1.00[EUR][1000 genomes]
rs6440725	1.00[EUR][1000 genomes]
rs6767615	1.00[EUR][1000 genomes]
rs6774659	1.00[EUR][1000 genomes]
rs6776934	1.00[EUR][1000 genomes]
rs6777211	1.00[EUR][1000 genomes]
rs6787551	1.00[EUR][1000 genomes]
rs6790244	1.00[EUR][1000 genomes]
rs6790349	1.00[EUR][1000 genomes]
rs6794447	1.00[EUR][1000 genomes]
rs73009177	1.00[EUR][1000 genomes]
rs73012978	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012988	1.00[EUR][1000 genomes]
rs73012992	1.00[EUR][1000 genomes]
rs73013000	1.00[EUR][1000 genomes]
rs73014806	1.00[EUR][1000 genomes]
rs73014871	1.00[EUR][1000 genomes]
rs73014873	1.00[EUR][1000 genomes]
rs73016712	1.00[EUR][1000 genomes]
rs73016789	1.00[EUR][1000 genomes]
rs73018620	1.00[EUR][1000 genomes]
rs73019093	1.00[EUR][1000 genomes]
rs73019099	1.00[EUR][1000 genomes]
rs73021108	1.00[EUR][1000 genomes]
rs73021116	1.00[EUR][1000 genomes]
rs73021129	1.00[EUR][1000 genomes]
rs73021144	1.00[EUR][1000 genomes]
rs7610549	1.00[EUR][1000 genomes]
rs7618087	1.00[EUR][1000 genomes]
rs7638986	1.00[EUR][1000 genomes]
rs7653225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2753152	chr3:150773248-150810545	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150802600-150806600	Active TSS	Brain Angular Gyrus	brain
2	chr3:150802600-150806600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:150802600-150806800	Active TSS	Brain Cingulate Gyrus	brain
4	chr3:150803000-150806600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr3:150805200-150807400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:150805200-150807600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:150805200-150808200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:150805400-150806800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr3:150805400-150806800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:150805400-150807600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:150805400-150812000	Weak transcription	Thymus	Thymus
12	chr3:150805600-150806800	Enhancers	Dnd41	blood
13	chr3:150805600-150809000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:150805600-150811400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:150805600-150811600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:150805800-150806600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:150805800-150809000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:150805800-150809800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:150805800-150811200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:150806000-150806600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:150806000-150806600	Active TSS	Fetal Brain Female	brain
22	chr3:150806000-150806800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:150806000-150807200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:150806000-150808400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:150806000-150809400	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:150806000-150814400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr3:150806200-150806600	Enhancers	Brain Germinal Matrix	brain
28	chr3:150806200-150806800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr3:150806200-150806800	Enhancers	Fetal Muscle Leg	muscle
30	chr3:150806200-150807400	Weak transcription	Fetal Brain Male	brain
31	chr3:150806200-150809600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:150806400-150806600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr3:150806400-150806800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:150806400-150806800	Enhancers	Brain Anterior Caudate	brain
35	chr3:150806400-150807200	Enhancers	Primary hematopoietic stem cells	blood
36	chr3:150806400-150807400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr3:150806400-150807400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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