Variant report

Variant	rs3732757
Chromosome Location	chr3:151046604-151046605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151021027..151023183-chr3:151044316..151046639,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16863203	1.00[YRI][hapmap]
rs16863239	1.00[YRI][hapmap]
rs16863305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16863316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732756	1.00[YRI][hapmap]
rs3821668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56095143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57361678	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57764098	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73006551	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73006582	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151044400-151047000	Active TSS	Brain Hippocampus Middle	brain
2	chr3:151045000-151046800	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr3:151045000-151046800	Active TSS	Brain Cingulate Gyrus	brain
4	chr3:151045000-151046800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr3:151045000-151047200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:151045000-151047200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr3:151045200-151046800	Active TSS	Duodenum Mucosa	Duodenum
8	chr3:151045200-151046800	Active TSS	Right Atrium	heart
9	chr3:151045200-151047000	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr3:151045200-151047600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:151045400-151047400	Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr3:151045400-151047800	Active TSS	Primary monocytes fromperipheralblood	blood
13	chr3:151045600-151047200	Active TSS	Primary T cells from cord blood	blood
14	chr3:151045600-151047800	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
17	chr3:151045800-151046800	Enhancers	Hela-S3	cervix
18	chr3:151045800-151046800	Enhancers	NHDF-Ad	bronchial
19	chr3:151046000-151046800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:151046000-151046800	Enhancers	Primary B cells from peripheral blood	blood
21	chr3:151046000-151046800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:151046000-151046800	Active TSS	Fetal Intestine Large	intestine
23	chr3:151046000-151046800	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr3:151046000-151046800	Enhancers	Osteobl	bone
25	chr3:151046200-151046800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:151046200-151046800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr3:151046200-151046800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:151046200-151046800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:151046200-151046800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:151046200-151046800	Active TSS	Brain Anterior Caudate	brain
31	chr3:151046200-151046800	Active TSS	Fetal Muscle Trunk	muscle
32	chr3:151046200-151046800	Flanking Active TSS	Fetal Thymus	thymus
33	chr3:151046200-151046800	Active TSS	Rectal Smooth Muscle	rectum
34	chr3:151046200-151046800	Active TSS	Thymus	Thymus
35	chr3:151046200-151047000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:151046200-151047400	Active TSS	Monocytes-CD14+_RO01746	blood
37	chr3:151046400-151046800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr3:151046400-151046800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:151046400-151046800	Active TSS	Liver	Liver
40	chr3:151046400-151046800	Active TSS	Fetal Intestine Small	intestine
41	chr3:151046400-151046800	Active TSS	Placenta	Placenta
42	chr3:151046400-151047000	Active TSS	Primary B cells from cord blood	blood
43	chr3:151046600-151046800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr3:151046600-151046800	Enhancers	A549	lung
45	chr3:151046600-151046800	Enhancers	HMEC	breast
46	chr3:151046600-151046800	Enhancers	NHEK	skin
47	chr3:151046600-151047000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:151046600-151047000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr3:151046600-151047000	Active TSS	Fetal Muscle Leg	muscle

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