Variant report

Variant	rs73006582
Chromosome Location	chr3:151065592-151065593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151063727..151066442-chr3:151089515..151092440,2	K562	blood:
2	chr3:151052968..151055186-chr3:151065504..151067595,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16863305	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16863316	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16863337	0.83[AFR][1000 genomes]
rs3732757	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3821668	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56095143	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57361678	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57764098	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804600	0.81[AFR][1000 genomes]
rs73006551	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063200-151066000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr3:151063800-151065800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:151063800-151066800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:151064000-151065600	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:151064200-151065600	Weak transcription	Brain Anterior Caudate	brain
8	chr3:151064200-151069000	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:151064200-151069800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:151064400-151065800	Enhancers	Fetal Thymus	thymus
11	chr3:151064400-151067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:151064400-151089200	Weak transcription	NHLF	lung
13	chr3:151064600-151067200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:151064600-151068400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:151064600-151075200	Weak transcription	Adipose Nuclei	Adipose
16	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:151064800-151066000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:151065000-151065600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:151065000-151065600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:151065000-151065800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr3:151065000-151065800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:151065000-151065800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:151065200-151065600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:151065200-151065800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:151065200-151065800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr3:151065200-151065800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:151065200-151065800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:151065200-151066000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr3:151065200-151066000	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:151065200-151069400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr3:151065400-151065600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:151065400-151065600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:151065400-151065600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr3:151065400-151065800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr3:151065400-151069000	Enhancers	Primary B cells from cord blood	blood
36	chr3:151065400-151079600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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