Variant report

Variant	rs1355769
Chromosome Location	chr3:111455801-111455802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111448052..111452466-chr3:111452775..111456031,4	MCF-7	breast:
2	chr3:111452923..111457246-chr3:111577346..111581538,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction
ENSG00000240891	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10804492	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922220	0.90[CEU][hapmap]
rs12490337	0.89[CEU][hapmap];0.80[CHB][hapmap];0.88[EUR][1000 genomes]
rs12495513	0.82[JPT][hapmap]
rs12632878	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4325897	0.90[CEU][hapmap]
rs4491869	0.81[CEU][hapmap]
rs4557129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782962	0.85[CEU][hapmap]
rs6784441	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6801225	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629156	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955382	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591290	chr3:111427455-111462570	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111427600-111456000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:111442400-111456000	Weak transcription	Lung	lung
3	chr3:111444200-111456000	Weak transcription	Aorta	Aorta
4	chr3:111445200-111456800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:111449400-111456000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:111449600-111456000	Weak transcription	Esophagus	oesophagus
7	chr3:111451600-111460400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:111452200-111458200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:111452400-111456000	Weak transcription	Gastric	stomach
10	chr3:111452400-111458800	Enhancers	HMEC	breast
11	chr3:111452600-111457200	Enhancers	HSMM	muscle
12	chr3:111452800-111459200	Enhancers	Osteobl	bone
13	chr3:111452800-111460400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:111453000-111459400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:111453200-111456200	Weak transcription	Fetal Kidney	kidney
16	chr3:111453400-111458600	Enhancers	HSMMtube	muscle
17	chr3:111453600-111456800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:111453600-111456800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:111453600-111458800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111453600-111458800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:111453600-111459000	Enhancers	NHDF-Ad	bronchial
22	chr3:111453800-111456600	Enhancers	NHLF	lung
23	chr3:111453800-111457600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:111453800-111457600	Enhancers	NHEK	skin
25	chr3:111454200-111456000	Weak transcription	Fetal Intestine Small	intestine
26	chr3:111454200-111456800	Enhancers	NH-A	brain
27	chr3:111454200-111458200	Enhancers	Hela-S3	cervix
28	chr3:111454600-111458000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr3:111454600-111459400	Enhancers	HepG2	liver
30	chr3:111454600-111459600	Enhancers	Liver	Liver
31	chr3:111454800-111456200	Enhancers	A549	lung
32	chr3:111454800-111460400	Enhancers	Fetal Heart	heart
33	chr3:111454800-111464400	Weak transcription	Placenta	Placenta
34	chr3:111455000-111456000	Weak transcription	Stomach Mucosa	stomach
35	chr3:111455000-111456600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:111455000-111457600	Weak transcription	HUVEC	blood vessel
37	chr3:111455000-111461000	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr3:111455200-111457000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:111455600-111456200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:111455600-111456400	Enhancers	Left Ventricle	heart
41	chr3:111455600-111456400	Enhancers	Ovary	ovary
42	chr3:111455600-111457000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:111455600-111458600	Enhancers	Right Atrium	heart
44	chr3:111455600-111458800	Enhancers	Adipose Nuclei	Adipose
45	chr3:111455800-111456000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:111455800-111456200	Strong transcription	Primary T cells from cord blood	blood
47	chr3:111455800-111456200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:111455800-111456400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:111455800-111456400	Enhancers	Pancreas	Pancrea
50	chr3:111455800-111456400	Enhancers	Right Ventricle	heart

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