Variant report

Variant	rs4325897
Chromosome Location	chr3:111423342-111423343
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10511301	1.00[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10804492	0.85[CEU][hapmap]
rs11922220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632878	0.85[CEU][hapmap]
rs1355769	0.90[CEU][hapmap]
rs4491869	0.90[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4502554	1.00[CHB][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes]
rs4557129	0.90[CEU][hapmap]
rs4630914	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4640528	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs4682302	0.90[CEU][hapmap]
rs60085111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771062	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6782962	0.95[CEU][hapmap]
rs6784441	0.85[CEU][hapmap]
rs6794420	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6796976	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7629156	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111406200-111426800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:111410200-111426800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:111410200-111428400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:111410200-111433200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:111410600-111443400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:111412200-111426800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:111412400-111426800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:111412400-111426800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:111412800-111430800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:111413000-111427000	Weak transcription	Primary B cells from cord blood	blood
11	chr3:111413600-111426800	Weak transcription	Fetal Intestine Small	intestine
12	chr3:111413600-111426800	Weak transcription	Fetal Thymus	thymus
13	chr3:111413800-111427200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:111414400-111426800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:111415200-111454200	Weak transcription	Small Intestine	intestine
16	chr3:111415600-111430800	Weak transcription	Osteobl	bone
17	chr3:111415600-111431000	Weak transcription	HMEC	breast
18	chr3:111415600-111436000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:111415600-111436400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:111416200-111426800	Weak transcription	NHEK	skin
21	chr3:111416200-111431200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:111418200-111442000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:111418600-111427000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:111418800-111426800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:111419000-111427000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:111419000-111436000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:111419000-111436200	Weak transcription	Stomach Mucosa	stomach
28	chr3:111419200-111426600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:111419400-111426600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:111419400-111426800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr3:111419600-111428600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:111419600-111431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:111419600-111431000	Weak transcription	GM12878-XiMat	blood
34	chr3:111420400-111450600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:111420600-111445600	Weak transcription	HepG2	liver
36	chr3:111421400-111434600	Weak transcription	A549	lung
37	chr3:111422000-111433400	Weak transcription	HSMMtube	muscle
38	chr3:111422200-111426800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:111422200-111431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:111422400-111424600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:111422400-111426800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:111422600-111430800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:111423200-111430400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:111423200-111434600	Weak transcription	HUVEC	blood vessel

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