Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10170065	0.82[YRI][hapmap]
rs10176524	1.00[CEU][hapmap]
rs10201617	0.89[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10427313	1.00[CEU][hapmap]
rs10932414	1.00[CEU][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10932415	0.81[EUR][1000 genomes]
rs1402717	0.82[YRI][hapmap]
rs1521539	0.80[YRI][hapmap]
rs1521541	0.89[CEU][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs1521542	0.89[CEU][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs1521543	0.82[YRI][hapmap]
rs1521545	0.82[MEX][hapmap]
rs1521547	1.00[CEU][hapmap]
rs1568519	0.82[TSI][hapmap]
rs17343843	1.00[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs2177035	0.85[YRI][hapmap]
rs2888038	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4284776	0.91[EUR][1000 genomes]
rs4471839	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4672635	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61276593	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6730882	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6734102	1.00[CEU][hapmap]
rs6734634	1.00[CEU][hapmap]
rs72937800	0.88[EUR][1000 genomes]
rs72939804	0.91[EUR][1000 genomes]
rs7558615	1.00[CEU][hapmap]
rs7582302	0.91[EUR][1000 genomes]
rs7591736	0.80[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7600270	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875798	chr2:212852669-212961992	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875803	chr2:212874828-212969560	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212946600-212959400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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