Variant report

Variant	rs6734102
Chromosome Location	chr2:212872139-212872140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10169217	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176524	1.00[CEU][hapmap]
rs10201617	0.88[CEU][hapmap]
rs10427313	1.00[CEU][hapmap]
rs10932414	1.00[CEU][hapmap]
rs12464843	1.00[ASN][1000 genomes]
rs12466520	0.87[ASN][1000 genomes]
rs12476274	0.93[ASN][1000 genomes]
rs12477159	1.00[ASN][1000 genomes]
rs1357127	1.00[CEU][hapmap]
rs1402716	0.87[ASN][1000 genomes]
rs1402718	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1473636	0.87[ASN][1000 genomes]
rs1473637	0.87[ASN][1000 genomes]
rs1473638	0.87[ASN][1000 genomes]
rs1521537	0.85[ASN][1000 genomes]
rs1521541	0.88[CEU][hapmap]
rs1521542	0.88[CEU][hapmap]
rs1521547	1.00[CEU][hapmap]
rs1546717	0.82[ASN][1000 genomes]
rs17343843	1.00[CEU][hapmap]
rs2888038	1.00[CEU][hapmap]
rs4672635	1.00[CEU][hapmap]
rs59081924	0.97[ASN][1000 genomes]
rs6435684	0.87[ASN][1000 genomes]
rs6715981	0.87[ASN][1000 genomes]
rs6734634	1.00[CEU][hapmap]
rs73087372	0.82[ASN][1000 genomes]
rs7558615	1.00[CEU][hapmap]
rs7574462	0.87[ASN][1000 genomes]
rs7591736	1.00[CEU][hapmap]
rs7595560	1.00[ASN][1000 genomes]
rs7600270	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875791	chr2:212824999-212874828	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875792	chr2:212824999-212896571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv584343	chr2:212830200-212906355	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1012269	chr2:212837487-212915640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv525127	chr2:212839046-212916758	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv875794	chr2:212842777-212885510	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv875796	chr2:212845292-212874828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv875797	chr2:212847605-212888988	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv470513	chr2:212852669-212874828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv875798	chr2:212852669-212961992	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv875799	chr2:212856539-212874828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv875800	chr2:212856539-212896571	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv875801	chr2:212856539-212929014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv460071	chr2:212860841-212888988	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv584344	chr2:212860841-212888988	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv460072	chr2:212864338-212891401	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv584345	chr2:212864338-212891401	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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