Variant report

Variant	rs1546717
Chromosome Location	chr2:212902339-212902340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10169217	0.82[ASN][1000 genomes]
rs10175279	0.93[YRI][hapmap]
rs10197270	0.84[ASW][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs11692869	0.86[AFR][1000 genomes]
rs12373751	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12464843	0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12466520	0.94[ASN][1000 genomes]
rs12470737	1.00[JPT][hapmap]
rs12473708	1.00[CHD][hapmap]
rs12477159	0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12478950	1.00[CHD][hapmap]
rs12694257	0.93[YRI][hapmap]
rs1402716	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1402718	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1464443	1.00[CHD][hapmap]
rs1473636	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1473637	0.94[ASN][1000 genomes]
rs1473638	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs1521537	0.92[ASW][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs1521550	0.83[CHD][hapmap]
rs1521553	1.00[CHD][hapmap];0.86[YRI][hapmap]
rs16847568	1.00[CHD][hapmap]
rs16847575	1.00[JPT][hapmap]
rs16847580	1.00[CHD][hapmap]
rs17337014	0.85[JPT][hapmap]
rs17343912	1.00[JPT][hapmap]
rs17343932	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17344051	1.00[CHD][hapmap]
rs17415843	0.89[ASN][1000 genomes]
rs17415969	1.00[CHD][hapmap]
rs17416172	0.83[CHD][hapmap]
rs1879637	0.85[JPT][hapmap]
rs2139940	0.93[YRI][hapmap]
rs4672634	0.93[YRI][hapmap]
rs4672636	0.84[ASW][hapmap];1.00[CHD][hapmap];0.93[YRI][hapmap]
rs59081924	0.84[ASN][1000 genomes]
rs6435684	0.94[ASN][1000 genomes]
rs6435691	0.83[CHD][hapmap]
rs6712126	1.00[CHD][hapmap]
rs6715981	0.94[ASN][1000 genomes]
rs73087372	1.00[ASN][1000 genomes]
rs7574462	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7582903	1.00[JPT][hapmap]
rs7595560	0.82[ASN][1000 genomes]
rs939645	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs954310	0.93[YRI][hapmap]
rs960824	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs9678219	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584343	chr2:212830200-212906355	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1012269	chr2:212837487-212915640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525127	chr2:212839046-212916758	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv875798	chr2:212852669-212961992	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv875801	chr2:212856539-212929014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv875803	chr2:212874828-212969560	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1014136	chr2:212883977-212915640	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212901800-212902800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:212902000-212902400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:212902000-212902400	Enhancers	Brain Anterior Caudate	brain
4	chr2:212902000-212902400	Enhancers	Brain Hippocampus Middle	brain
5	chr2:212902000-212902400	Enhancers	Brain Substantia Nigra	brain

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