Variant report

Variant	rs9678219
Chromosome Location	chr2:212937649-212937650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212932110..212934697-chr2:212936693..212938362,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10197270	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10445735	0.83[CEU][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap]
rs10445808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs10497958	1.00[CHB][hapmap]
rs12373751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12464843	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs12466520	0.86[ASN][1000 genomes]
rs12470737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12473708	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12476163	1.00[CHB][hapmap]
rs12477159	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs12478950	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1402716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1402718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1464443	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1473636	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1473637	0.86[ASN][1000 genomes]
rs1473638	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1521537	1.00[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1521550	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1521553	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1546717	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16847568	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16847575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847580	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17337014	0.85[JPT][hapmap]
rs17343912	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17343932	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs17344051	1.00[CHD][hapmap]
rs17344065	1.00[CHB][hapmap]
rs17415843	0.97[ASN][1000 genomes]
rs17415969	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17416172	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1879637	0.85[JPT][hapmap]
rs2139939	1.00[CHB][hapmap]
rs2139940	1.00[CHB][hapmap]
rs2371444	1.00[CHB][hapmap]
rs4672634	1.00[CHB][hapmap]
rs4672636	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs60885616	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6435684	0.86[ASN][1000 genomes]
rs6435691	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs6712126	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap]
rs6715981	0.86[ASN][1000 genomes]
rs73087372	0.91[ASN][1000 genomes]
rs7574462	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7582903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs939645	1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs960824	0.83[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875798	chr2:212852669-212961992	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875803	chr2:212874828-212969560	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212937600-212938800	Enhancers	HUES64 Cell Line	embryonic stem cell

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