Variant report

Variant	rs1357482
Chromosome Location	chr4:8496683-8496684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8495654..8498484-chr4:8534530..8537327,2	MCF-7	breast:
2	chr4:8493970..8498267-chr4:8498833..8501951,5	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10002453	1.00[ASN][1000 genomes]
rs1568694	1.00[ASN][1000 genomes]
rs16842165	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222461	0.86[EUR][1000 genomes]
rs28551127	1.00[ASN][1000 genomes]
rs28627156	1.00[ASN][1000 genomes]
rs28647682	1.00[ASN][1000 genomes]
rs58141973	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58250358	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59065368	1.00[ASN][1000 genomes]
rs61738667	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62287391	1.00[ASN][1000 genomes]
rs6810854	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6814163	1.00[ASN][1000 genomes]
rs6815431	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823826	0.82[EUR][1000 genomes]
rs6826283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826302	1.00[ASN][1000 genomes]
rs6830523	0.82[ASW][hapmap]
rs6830982	0.82[EUR][1000 genomes]
rs6843048	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853292	1.00[ASN][1000 genomes]
rs6853810	0.87[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6854153	1.00[ASN][1000 genomes]
rs6855488	1.00[ASN][1000 genomes]
rs7672913	0.93[EUR][1000 genomes]
rs954272	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884410	0.93[EUR][1000 genomes]
rs9995201	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:8478000-8500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:8479200-8501400	Weak transcription	Liver	Liver
4	chr4:8480200-8498400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:8480200-8501400	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:8480600-8498200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:8480800-8497400	Weak transcription	Spleen	Spleen
8	chr4:8481400-8496800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:8481400-8501400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:8481800-8497400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:8482200-8501400	Weak transcription	Primary T cells from cord blood	blood
12	chr4:8484200-8497000	Weak transcription	Placenta	Placenta
13	chr4:8491000-8497600	Weak transcription	Ovary	ovary
14	chr4:8491000-8501400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
16	chr4:8492000-8498800	Weak transcription	Fetal Stomach	stomach
17	chr4:8492000-8499600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:8493200-8496800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:8495000-8496800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:8495800-8501400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:8496000-8499400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:8496200-8501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:8496400-8501200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:8496600-8496800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr4:8496600-8496800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:8496600-8497000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:8496600-8497600	ZNF genes & repeats	Lung	lung

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