Variant report

Variant	rs6826302
Chromosome Location	chr4:8509973-8509974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10002453	1.00[ASN][1000 genomes]
rs1357482	1.00[ASN][1000 genomes]
rs1568694	1.00[ASN][1000 genomes]
rs16842165	1.00[ASN][1000 genomes]
rs28551127	1.00[ASN][1000 genomes]
rs28627156	1.00[ASN][1000 genomes]
rs28647682	1.00[ASN][1000 genomes]
rs58141973	1.00[ASN][1000 genomes]
rs58250358	1.00[ASN][1000 genomes]
rs59065368	1.00[ASN][1000 genomes]
rs61738667	1.00[ASN][1000 genomes]
rs62287391	1.00[ASN][1000 genomes]
rs6814163	1.00[ASN][1000 genomes]
rs6815431	1.00[ASN][1000 genomes]
rs6826283	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6843048	1.00[ASN][1000 genomes]
rs6853292	1.00[ASN][1000 genomes]
rs6854153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954272	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9995201	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8501800-8510600	Enhancers	Ovary	ovary
2	chr4:8502800-8512800	Enhancers	Placenta	Placenta
3	chr4:8504200-8510600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:8504600-8510800	Enhancers	Fetal Muscle Leg	muscle
5	chr4:8507200-8512000	Weak transcription	Gastric	stomach
6	chr4:8507800-8510000	Enhancers	NHDF-Ad	bronchial
7	chr4:8508200-8511600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:8508400-8510400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:8509000-8510000	Weak transcription	Spleen	Spleen
10	chr4:8509000-8519200	Weak transcription	Brain Germinal Matrix	brain
11	chr4:8509200-8511200	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:8509200-8513200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:8509400-8510400	Weak transcription	Brain Anterior Caudate	brain
14	chr4:8509400-8513200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:8509400-8514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:8509400-8517200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:8509600-8510600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:8509600-8514200	Weak transcription	HSMMtube	muscle
19	chr4:8509600-8515200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:8509600-8515600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:8509800-8510200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:8509800-8511600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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