Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10227979	0.83[EUR][1000 genomes]
rs10228229	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10264014	0.85[EUR][1000 genomes]
rs11532681	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1528138	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16878648	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16878649	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16878650	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17150150	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17150152	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17169166	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17169172	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17169183	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1918850	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918851	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1950009	0.85[ASN][1000 genomes]
rs4719458	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59640542	0.84[EUR][1000 genomes]
rs7455787	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7778080	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782436	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024621	chr7:16009368-16030199	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16012000-16014400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:16013200-16014400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:16013200-16017000	Weak transcription	Osteobl	bone
4	chr7:16013200-16017400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:16013200-16017400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:16013200-16017400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:16013200-16017400	Weak transcription	NHDF-Ad	bronchial
8	chr7:16013400-16016800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:16013400-16017200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:16013600-16015000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:16013800-16017000	Weak transcription	HUVEC	blood vessel

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