Variant report
| Variant | rs1528138 |
|---|---|
| Chromosome Location | chr7:16004425-16004426 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10227979 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10228229 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10264014 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11532681 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1358449 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16878648 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs16878649 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs16878650 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17150150 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17150152 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17169166 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17169172 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17169183 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1918850 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1918851 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1950009 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4719458 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59640542 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7455787 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7778080 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7782436 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523199 | chr7:15582208-16042596 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv949309 | chr7:15986709-16236162 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3360269 | chr7:16004277-16006875 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:15992400-16010800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr7:16003400-16012400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
