Variant report

Variant	rs1358606
Chromosome Location	chr3:82179071-82179072
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12638629	0.88[EUR][1000 genomes]
rs2141491	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4856374	0.90[ASN][1000 genomes]
rs9309884	0.84[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82177400-82179400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:82177400-82181800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:82177600-82179600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:82178000-82179800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:82178400-82179600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr3:82178600-82179200	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:82178600-82179400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr3:82178600-82179400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr3:82178800-82179400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr3:82178800-82179600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr3:82179000-82179400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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