Variant report

Variant	rs1359178
Chromosome Location	chr1:58305432-58305433
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1202822	0.94[CHB][hapmap];0.80[EUR][1000 genomes]
rs12031324	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12039828	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs12040462	0.81[EUR][1000 genomes]
rs12073088	0.81[EUR][1000 genomes]
rs1408145	0.83[CEU][hapmap]
rs1924267	0.82[CEU][hapmap]
rs2038379	0.84[JPT][hapmap]
rs2897366	0.88[CEU][hapmap]
rs4134429	0.81[EUR][1000 genomes]
rs6656625	0.81[EUR][1000 genomes]
rs6682022	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67718048	0.81[EUR][1000 genomes]
rs7527007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544285	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs989239	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58299200-58306000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:58301600-58306800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:58301800-58306800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:58301800-58306800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:58304200-58305600	Enhancers	NH-A	brain
6	chr1:58304400-58306000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr1:58304600-58305600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:58304600-58305800	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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