Variant report

Variant	rs12039828
Chromosome Location	chr1:58280380-58280381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11207106	0.89[CEU][hapmap]
rs12024987	0.94[CEU][hapmap];0.82[YRI][hapmap]
rs12040462	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073088	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1323833	0.94[CEU][hapmap]
rs1359178	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1408143	0.94[CEU][hapmap]
rs1408145	0.94[CEU][hapmap]
rs1924267	0.94[CEU][hapmap]
rs2897366	1.00[CEU][hapmap]
rs4134429	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4532849	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6656625	0.99[EUR][1000 genomes]
rs6682022	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67718048	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527007	0.81[EUR][1000 genomes]
rs7544285	0.94[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs989239	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58278000-58280600	Enhancers	Fetal Stomach	stomach
2	chr1:58279800-58280400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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