Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1022636	0.82[YRI][hapmap]
rs11207106	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12024987	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs1202829	0.82[YRI][hapmap]
rs1202834	0.82[YRI][hapmap]
rs1202835	1.00[YRI][hapmap]
rs1202837	0.82[YRI][hapmap]
rs1202839	0.83[YRI][hapmap]
rs1202841	0.83[YRI][hapmap]
rs12039828	0.94[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12040462	1.00[EUR][1000 genomes]
rs12073088	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1359178	0.81[EUR][1000 genomes]
rs1408143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1408145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1924267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2897366	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs4134429	1.00[EUR][1000 genomes]
rs4532849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6656625	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682022	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67718048	1.00[EUR][1000 genomes]
rs7527007	0.81[EUR][1000 genomes]
rs7544285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7552143	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: