Variant report

Variant	rs1360782
Chromosome Location	chr6:119434014-119434015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12530153	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs57363942	0.86[ASN][1000 genomes]
rs629109	0.83[ASN][1000 genomes]
rs644640	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs659466	0.84[ASN][1000 genomes]
rs6935642	0.85[ASN][1000 genomes]
rs9320679	0.81[ASN][1000 genomes]
rs9481884	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1360782	FAM184A	cis	parietal	SCAN
rs1360782	MCM9	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119431800-119434200	Weak transcription	Placenta	Placenta
2	chr6:119431800-119438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:119432000-119434200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:119432400-119434200	Weak transcription	HepG2	liver
5	chr6:119432400-119440800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:119433400-119435000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:119433800-119434400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:119433800-119434400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:119433800-119434400	Enhancers	Fetal Lung	lung
10	chr6:119433800-119434600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:119433800-119434600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:119434000-119434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:119434000-119434200	Enhancers	GM12878-XiMat	blood
14	chr6:119434000-119434400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:119434000-119434600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:119434000-119434600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:119434000-119434600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:119434000-119434600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:119434000-119434600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:119434000-119434600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:119434000-119434600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:119434000-119434600	Enhancers	Dnd41	blood
23	chr6:119434000-119434600	Enhancers	HUVEC	blood vessel
24	chr6:119434000-119434600	Enhancers	K562	blood
25	chr6:119434000-119434800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:119434000-119434800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:119434000-119434800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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