Variant report

Variant	rs9481884
Chromosome Location	chr6:119441316-119441317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12530153	0.85[AMR][1000 genomes]
rs1360782	0.84[ASN][1000 genomes]
rs629109	0.99[ASN][1000 genomes]
rs644640	0.96[ASN][1000 genomes]
rs659466	1.00[ASN][1000 genomes]
rs6935642	0.94[ASN][1000 genomes]
rs7744514	0.88[ASN][1000 genomes]
rs9320679	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9489597	0.86[AFR][1000 genomes]
rs9489598	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119434600-119443400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:119439200-119448400	Weak transcription	K562	blood
3	chr6:119440400-119444000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:119440400-119445400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:119440600-119445400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:119440600-119448400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:119440800-119441800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:119440800-119441800	Enhancers	Osteobl	bone
9	chr6:119440800-119442000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:119440800-119445600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:119441000-119441400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:119441000-119441400	Enhancers	NH-A	brain
13	chr6:119441000-119441400	Enhancers	NHDF-Ad	bronchial
14	chr6:119441000-119441600	Enhancers	Adipose Nuclei	Adipose
15	chr6:119441000-119441800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:119441000-119441800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:119441000-119441800	Enhancers	HSMM	muscle
18	chr6:119441000-119442200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr6:119441200-119441400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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