Variant report
| Variant | rs1361936 |
|---|---|
| Chromosome Location | chr7:126931152-126931153 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TCF12 | chr7:126930869-126931405 | SK-N-SH | brain: | n/a | n/a |
| 2 | NFIC | chr7:126930793-126931457 | SK-N-SH | brain: | n/a | chr7:126931116-126931133 |
| 3 | GATA3 | chr7:126930710-126931382 | SK-N-SH | brain: | n/a | n/a |
| 4 | PBX3 | chr7:126930876-126931367 | SK-N-SH | brain: | n/a | n/a |
| 5 | GATA3 | chr7:126930767-126931388 | SK-N-SH | brain: | n/a | n/a |
| 6 | PBX3 | chr7:126930972-126931394 | SK-N-SH | brain: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236105 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10228722 | 0.91[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs10258076 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs11563399 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11563675 | 0.91[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs12706770 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs12706772 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs13222063 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs13232203 | 0.93[EUR][1000 genomes] |
| rs17861434 | 1.00[CEU][hapmap] |
| rs17863255 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs17863256 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs17863258 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs17863264 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs17866154 | 0.81[EUR][1000 genomes] |
| rs17867802 | 0.90[EUR][1000 genomes] |
| rs17867811 | 0.99[EUR][1000 genomes] |
| rs1858776 | 0.93[EUR][1000 genomes] |
| rs7797094 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs951640 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126930000-126931600 | Enhancers | Fetal Brain Male | brain |
