Variant report

Variant	rs136223
Chromosome Location	chr22:31219869-31219870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs136224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2107401	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2413001	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4820907	0.91[AMR][1000 genomes]
rs5753338	0.92[ASN][1000 genomes]
rs5753339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs738372	0.92[ASN][1000 genomes]
rs8139392	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv588888	chr22:31212641-31249333	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs136223	ZMAT5	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31218800-31220000	Enhancers	NHEK	skin
2	chr22:31218800-31222400	Weak transcription	A549	lung
3	chr22:31219000-31221400	Weak transcription	Pancreas	Pancrea
4	chr22:31219000-31223200	Weak transcription	HSMM	muscle
5	chr22:31219000-31224600	Weak transcription	HSMMtube	muscle
6	chr22:31219200-31220200	Enhancers	Brain Hippocampus Middle	brain
7	chr22:31219200-31220400	Enhancers	Brain Angular Gyrus	brain
8	chr22:31219200-31221400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr22:31219200-31221400	Weak transcription	Brain Substantia Nigra	brain
10	chr22:31219200-31224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr22:31219200-31224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr22:31219200-31225800	Weak transcription	Gastric	stomach
13	chr22:31219400-31220400	Enhancers	Brain Anterior Caudate	brain
14	chr22:31219400-31221600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr22:31219400-31221600	Genic enhancers	Hela-S3	cervix
16	chr22:31219400-31221800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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